Hi,
The problem is a small piece of code to check environment
variables which has not yet been patched.
To make things work all you need to do is the following: type
export POSSUMDIR=$FSLDIR
in your terminal to start with, and then run POSSUM from this
terminal afterwards. This should make sure it has the right
settings to run without error.
We will also get a patch ready soon to fix this generally.
Let us know if you have any more problems.
All the best,
Mark
On 26 Oct 2009, at 19:45, Zheng Liu wrote:
> Hi Mark,
>
> There are three logs in logs folder to show errors '/bin/sh: line
> 1: /bin/possum: No such file or directory'. I have attached them.
>
> Thanks,
>
> Zheng
>
> On Mon, Oct 26, 2009 at 2:22 PM, Mark Jenkinson
> <[log in to unmask]> wrote:
> Hi,
>
> I don't see the error message here in the logs.
> Have you included the error logs as well?
> Also, it would help me greatly to see which files the
> contents of the logs come from.
>
> All the best,
> Mark
>
>
>
> On 26 Oct 2009, at 18:27, Zheng Liu wrote:
>
> Hi Mark,
>
> I have attached the logs. Thank you very much.
>
> Zheng
>
> On Mon, Oct 26, 2009 at 12:55 PM, Mark Jenkinson
> <[log in to unmask]> wrote:
> Hi,
>
> This is probably because your environment isn't set up correctly, or
> you have a cluster which isn't setting things up correctly for the
> individual jobs. Are you running it with a cluster or not?
>
> If not, please send us the logs.
>
> All the best,
> Mark
>
>
>
> On 26 Oct 2009, at 17:22, Zheng Liu wrote:
>
> Hi,
>
> When I run POSSUM (Version is FSL_vm5_64), I didn't find the output
> file image_abs.nii.gz, just image.nii.gz. I don't know why. And when
> I check the logs file, there existing "/bin/sh: line 1: /bin/
> possum: No such file or directory". What means?
>
> Thanks!
>
> --
> Dr. Zheng Liu
> Postdoctoral student in Computer Vision and Image Analysis Lab
> Department of Electrical and Computer Engineering
> Texas Tech University, Lubbock, TX 79409
>
>
>
> --
> Dr. Zheng Liu
> Postdoctoral student in Computer Vision and Image Analysis Lab
> Department of Electrical and Computer Engineering
> Texas Tech University, Lubbock, TX 79409
> <possum.log>
>
>
>
> --
> Dr. Zheng Liu
> Postdoctoral student in Computer Vision and Image Analysis Lab
> Department of Electrical and Computer Engineering
> Texas Tech University, Lubbock, TX 79409
> <possumX_postproc.sh.e21914><possum.e21897.2><possum.e21897.1>
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