Dear Gwenaelle,
Thank you so much for your support, it works now!
Best,
Aga
On 9/23/09 5:56 PM, "Gwenaëlle DOUAUD" <[log in to unmask]> wrote:
> Hi Aga,
>
> got your directory, thanks.
>
> You should only put the *original* names of the T1w images (not the ones
> preprocessed by fslvbm1 which creates the _struc and _struc_brain ones) in
> your template_list file and, as we discussed before, only the .hdr OR the
> .img.
>
> So try to put simply:
> 1101.hdr
> 1110.hdr
>
> in the template_list and it should work ok.
>
> Cheers,
> Gwenaelle
>
> --- En date de : Mer 23.9.09, Burzynska, Aga <[log in to unmask]> a
> écrit :
>
>> De: Burzynska, Aga <[log in to unmask]>
>> Objet: [FSL] AW: [FSL] FSL-vbm: template_list + template creation
>> problems-continued
>> À: [log in to unmask]
>> Date: Mercredi 23 Septembre 2009, 16h38
>> Dear Mark,
>> Thank you. I couldnt find this link on the main fsl
>> website, but luckily found it also in the archives.
>>
>> The uplaod number is 508327, file: vbm.tar.gz
>>
>> Best,
>> Aga
>>
>>
>>
>>
>>
>> -----Ursprüngliche Nachricht-----
>> Von: FSL - FMRIB's Software Library im Auftrag von Mark
>> Jenkinson
>> Gesendet: Mi 2009-09-23 17:35
>> An: [log in to unmask]
>> Betreff: Re: [FSL] FSL-vbm: template_list + template
>> creation problems-continued
>>
>> Dear Aga,
>>
>> We do not allow large attachments on the list as it goes to
>> many people
>> and would clog up their mailboxes. You need to upload
>> data to the
>> website:
>> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>> and then send us the number of the download session.
>>
>> All the best,
>> Mark
>>
>>
>> On 23 Sep 2009, at 16:25, Burzynska, Aga wrote:
>>
>>> I am afraid I forgot the attachment. Now it comes!
>>>
>>> Best,
>>> Aga
>>>
>>> -----Ursprüngliche Nachricht-----
>>> Von: FSL - FMRIB's Software Library im Auftrag von
>> Burzynska, Aga
>>> Gesendet: Mi 2009-09-23 17:17
>>> An: [log in to unmask]
>>> Betreff: [FSL] : [FSL] FSL-vbm: template_list +
>> template creation
>>> problems-continued
>>>
>>> Hi,
>>> I attached the tar file. I hope it works this way (is
>> there other
>>> way to upload the files?).
>>>
>>> Best,
>>> Aga
>>>
>>>
>>> -----Ursprüngliche Nachricht-----
>>> Von: FSL - FMRIB's Software Library im Auftrag von
>> Gwenaëlle DOUAUD
>>> Gesendet: Mi 2009-09-23 16:34
>>> An: [log in to unmask]
>>> Betreff: [FSL] Re : [FSL] AW: [FSL] Re : [FSL]
>> FSL-vbm:
>>> template_list + template creation problems-continued
>>>
>>> Hi again,
>>>
>>> can you tar your vbm directory and upload it? I'll
>> have a look at
>>> it...
>>>
>>> Cheers,
>>> Gwenaelle
>>>
>>> --- En date de : Mer 23.9.09, Burzynska, Aga <[log in to unmask]
>>
>>>> a écrit :
>>>
>>>> De: Burzynska, Aga <[log in to unmask]>
>>>> Objet: [FSL] AW: [FSL] Re : [FSL] FSL-vbm:
>> template_list + template
>>>> creation problems-continued
>>>> À: [log in to unmask]
>>>> Date: Mercredi 23 Septembre 2009, 14h57
>>>> Hi Gwenaelle,
>>>> Here is ls of my vbm directory:
>>>> struc
>>>> template_list
>>>>
>>>> and the contents of the template_list file we
>> tried both:
>>>> 1101_struc.img
>>>> 1101_struc.hdr
>>>> 1110_struc.img
>>>> 1110_struc.hdr
>>>>
>>>>
>>>> or:
>>>> 1101_struc.img
>>>> 1110_struc.img
>>>>
>>>> Thank you for your help,
>>>> best,
>>>> Aga
>>>>
>>>>
>>>> Betreff: [FSL] Re : [FSL] FSL-vbm: template_list +
>> template
>>>> creation problems-continued
>>>>
>>>> Hi Aga,
>>>>
>>>> could you give me the result of an ls in your
>> fslvbm
>>>> directory and copy the template_list file?
>>>>
>>>> Cheers,
>>>> Gwenaelle
>>>>
>>>> --- En date de : Mer 23.9.09, Agnieszka Burzynska
>> <[log in to unmask]
>>
>>>>>
>>>> a écrit :
>>>>
>>>>> De: Agnieszka Burzynska <[log in to unmask]>
>>>>> Objet: [FSL] FSL-vbm: template_list +
>> template
>>>> creation problems-continued
>>>>> À: [log in to unmask]
>>>>> Date: Mercredi 23 Septembre 2009, 14h43
>>>>> Dear Gwenaelle,
>>>>> To solve this issue I decided to delete all
>> recently
>>>>> created files and run
>>>>> fslvbm_2_template -n again. Below you find my
>> outputs:
>>>> the
>>>>> template files
>>>>> are missing.
>>>>>
>>>>> 1101_struc.hdr
>>>>
>>>>>
>>>>> 1110_struc_brain_pve_0.nii
>>>>> fslvbm2a.o98661.2
>>>>> 1101_struc.img
>>>>
>>>>>
>>>>> 1110_struc_brain_pve_2.nii
>>>>> fslvbm2a.o98661.3
>>>>> 1101_struc_GM.nii
>>>>
>>>>>
>>>>> 1110_struc_brain_pveseg.nii
>>>>> fslvbm2b
>>>>> 1101_struc_GM_to_T.mat
>>>>
>>>>>
>>>> 1110_struc_brain_seg.nii
>>>>> fslvbm2b.e99177.1
>>>>> 1101_struc_GM_to_T.nii
>>>>
>>>>> 1112_struc.hdr
>>>>> fslvbm2b.e99177.2
>>>>> 1101_struc_GM_to_T_init_warp.msf
>>>>
>>>>> 1112_struc.img
>>>>> fslvbm2b.e99177.3
>>>>> 1101_struc_brain.hdr
>>>>
>>>>>
>>>> 1112_struc_GM.nii
>>>>> fslvbm2b.o99177.1
>>>>> 1101_struc_brain.img
>>>>
>>>>>
>>>> 1112_struc_GM_to_T.mat
>>>>> fslvbm2b.o99177.2
>>>>> 1101_struc_brain_mixeltype.nii
>>>>
>>>>> 1112_struc_GM_to_T.nii
>>>>> fslvbm2b.o99177.3
>>>>> 1101_struc_brain_pve_0.nii
>>>>
>>>>>
>>>> 1112_struc_GM_to_T_init_warp.msf
>>>>> fslvbm2c
>>>>> 1101_struc_brain_pve_2.nii
>>>>
>>>>> 1112_struc_brain.hdr
>>>>> fslvbm2c.e99418
>>>>> 1101_struc_brain_pveseg.nii
>>>>
>>>>> 1112_struc_brain.img
>>>>> fslvbm2c.o99418
>>>>> 1101_struc_brain_seg.nii
>>>>
>>>>>
>>>> 1112_struc_brain_mixeltype.nii
>>>>> fslvbm2d
>>>>> 1110_struc.hdr
>>>>
>>>>>
>>>>> 1112_struc_brain_pve_0.nii
>>>>> fslvbm2d.e99896.1
>>>>> 1110_struc.img
>>>>
>>>>>
>>>>> 1112_struc_brain_pve_2.nii
>>>>> fslvbm2d.e99896.2
>>>>> 1110_struc_GM.nii
>>>>
>>>>>
>>>>> 1112_struc_brain_pveseg.nii
>>>>> fslvbm2d.e99896.3
>>>>> 1110_struc_GM_to_T.mat
>>>>
>>>>>
>>>> 1112_struc_brain_seg.nii
>>>>> fslvbm2d.o99896.1
>>>>> 1110_struc_GM_to_T.nii
>>>>
>>>>> fslvbm2a
>>>>> fslvbm2d.o99896.2
>>>>> 1110_struc_GM_to_T_init_warp.msf
>>>>
>>>>> fslvbm2a.e98661.1
>>>>> fslvbm2d.o99896.3
>>>>> 1110_struc_brain.hdr
>>>
>>>>
>>>>>
>>>> fslvbm2a.e98661.2
>>>>> fslvbm2e
>>>>> 1110_struc_brain.img
>>>>
>>>>>
>>>> fslvbm2a.e98661.3
>>>>> fslvbm2e.e330
>>>>> 1110_struc_brain_mixeltype.nii
>>>>
>>>>> fslvbm2a.o98661.1
>>>>> fslvbm2e.o330
>>>>>
>>>>> The earlier error I traced appeared in
>>>> fslvbm2c.e
>>>>> And contains:
>>>>>
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> '{
>>>>> tf1nsinsicpg1252_struc_GM_to_T'
>>>>> ** ERROR: nifti_image_open({
>>>>> tf1nsinsicpg1252_struc_GM_to_T): bad header
>> info
>>>>> Error: failed to open file {
>>>>> tf1nsinsicpg1252_struc_GM_to_T
>>>>> Cannot open volume {
>>>>> tf1nsinsicpg1252_struc_GM_to_T for reading!
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_4D_GM'
>>>>> ** ERROR: nifti_image_open(template_4D_GM):
>> bad
>>>> header
>>>>> info
>>>>> Error: failed to open file template_4D_GM
>>>>> Cannot open volume template_4D_GM for
>> reading!
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_GM'
>>>>> ** ERROR: nifti_image_open(template_GM): bad
>> header
>>>> info
>>>>> Error: failed to open file template_GM
>>>>> ERROR: Could not open file
>>>>> /usr/local/fsl/bin/fslswapdim: line 105: [: =:
>> unary
>>>>> operator expected
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_GM'
>>>>> ** ERROR: nifti_image_open(template_GM): bad
>> header
>>>> info
>>>>> Error: failed to open file template_GM
>>>>> ERROR: Could not open file
>>>>> /usr/local/fsl/bin/fslswapdim: line 113: [:
>> -gt:
>>>> unary
>>>>> operator expected
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_GM'
>>>>> ** ERROR: nifti_image_open(template_GM): bad
>> header
>>>> info
>>>>> Error: failed to open file template_GM
>>>>> ERROR: Could not open file
>>>>> /usr/local/fsl/bin/fslswapdim: line 115: [:
>> -gt:
>>>> unary
>>>>> operator expected
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_GM'
>>>>> ** ERROR: nifti_image_open(template_GM): bad
>> header
>>>> info
>>>>> Error: failed to open file template_GM
>>>>> Cannot open volume template_GM for reading!
>>>>> ** ERROR (nifti_image_read): failed to find
>> header
>>>> file for
>>>>> 'template_GM'
>>>>> ** ERROR: nifti_image_open(template_GM): bad
>> header
>>>> info
>>>>> Error: failed to open file template_GM
>>>>> Cannot open volume template_GM for reading!
>>>>>
>>>>> Thank you for your help!
>>>>>
>>>>> Best,
>>>>> Aga
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 9/17/09 6:00 PM, "Gwenaëlle DOUAUD" <[log in to unmask]>
>>>>> wrote:
>>>>>
>>>>>> Hi Aga,
>>>>>>
>>>>>> this is not possible to have a
>> template_GM
>>>> created
>>>>> without the 4D_GM one. It
>>>>>> must have been moved or deleted
>> afterwards...
>>>> You
>>>>> should also check that your
>>>>>> template_GM is the most recent one (ls
>> -al) and
>>>> not
>>>>> one created a while ago.
>>>>>>
>>>>>> Cheers,
>>>>>> Gwenaelle
>>>>>>
>>>>>> --- En date de : Jeu 17.9..09, Agnieszka
>>>> Burzynska
>>>>>> <[log in to unmask]>
>>>>> a écrit :
>>>>>>
>>>>>>> De: Agnieszka Burzynska <[log in to unmask]>
>>>>>>> Objet: Re: [FSL] Re : [FSL] FSL-vbm:
>> how do i
>>>> know
>>>>> that template_list was
>>>>>>> read?
>>>>>>> À: [log in to unmask]
>>>>>>> Date: Jeudi 17 Septembre 2009, 16h55
>>>>>>> Dear Gwenaelle,
>>>>>>> Now the template_GM was created, but
>>>> templte_4D_GM
>>>>> not, so
>>>>>>> i cannot check
>>>>>>> which and how many volumes are
>> included in
>>>>> template
>>>>>>> creation.
>>>>>>>
>>>>>>> I will be very grateful for any
>> further
>>>> hint!
>>>>>>>
>>>>>>> Best,
>>>>>>> Aga
>>>>>>>
>>>>>>>
>>>>>>> On 9/17/09 12:43 PM, "Gwenaëlle
>> DOUAUD"
>>>> <[log in to unmask]>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi Aga,
>>>>>>>>
>>>>>>>> that's what I thought... The name
>> of the
>>>>> template list
>>>>>>> has to be *exactly*
>>>>>>>> "template_list", and it has to be
>> a text
>>
>>>>> file,
>>>>>>> otherwise this is not recognise
>>>>>>>> by the script and therefore not
>> taken
>>>> into
>>>>> account
>>>>>>> :-)...
>>>>>>>>
>>>>>>>> Cheers,
>>>>>>>> Gwenaelle
>>>>>>>>
>>>>>>>> --- En date de : Jeu 17.9.09,
>> Burzynska,
>>>> Aga
>>>>> <[log in to unmask]>
>>>>>>> a
>>>>>>>> écrit :
>>>>>>>>
>>>>>>>>> De: Burzynska, Aga <[log in to unmask]>
>>>>>>>>> Objet: [FSL] AW: [FSL] Re :
>> [FSL]
>>>> AW:
>>>>> [FSL] Re :
>>>>>>> [FSL] FSL-vbm: how do i know
>>>>>>>>> that template_list was read?
>>>>>>>>> À: [log in to unmask]
>>>>>>>>> Date: Jeudi 17 Septembre 2009,
>> 10h49
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> AW: [FSL] Re : [FSL] AW: [FSL]
>> Re :
>>>> [FSL]
>>>>>>> FSL-vbm:
>>>>>>>>> how do i know that
>> template_list was
>>>>> read?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Yes, sure, here it is!
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> best,
>>>>>>>>>
>>>>>>>>> Aga
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Aga Burzynska
>>>>>>>>>
>>>>>>>>> Max Planck Institute for
>> Human
>>>>> Development
>>>>>>>>>
>>>>>>>>> Neurocognition of Decision
>> Making
>>>>>>>>>
>>>>>>>>> Lentzeallee 94
>>>>>>>>>
>>>>>>>>> 14195 Berlin
>>>>>>>>>
>>>>>>>>> Ph: + 49 30 82406 335
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> -----Ursprüngliche
>> Nachricht-----
>>>>>>>>>
>>>>>>>>> Von: FSL - FMRIB's Software
>> Library
>>>> im
>>>>> Auftrag
>>>>>>> von
>>>>>>>>> Gwenaëlle DOUAUD
>>>>>>>>>
>>>>>>>>> Gesendet: Mi 2009-09-16 18:27
>>>>>>>>>
>>>>>>>>> An: [log in to unmask]
>>>>>>>>>
>>>>>>>>> Betreff: [FSL] Re : [FSL] AW:
>> [FSL]
>>>> Re :
>>>>> [FSL]
>>>>>>> FSL-vbm: how
>>>>>>>>> do i know that template_list
>> was
>>>> read?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Hi Aga,
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> could you please attach your
>>>> template_list
>>>>> file
>>>>>>> exactly as
>>>>>>>>> it is in your vbmAga
>> directory?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Cheers,
>>>>>>>>>
>>>>>>>>> Gwenaelle
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --- En date de : Mer
>> 16..9.09,
>>>> Burzynska,
>>>>> Aga
>>>>>>>>> <[log in to unmask]>
>>>>>>> a écrit :
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> De: Burzynska, Aga
>>>>>>>>> <[log in to unmask]>
>>>>>>>>>
>>>>>>>>>> Objet: [FSL] AW: [FSL] Re
>> :
>>>> [FSL]
>>>>> FSL-vbm: how
>>>>>>> do i
>>>>>>>>> know that template_list was
>> read?
>>>>>>>>>
>>>>>>>>>> À: [log in to unmask]
>>>>>>>>>
>>>>>>>>>> Date: Mercredi 16
>> Septembre
>>>> 2009,
>>>>> 17h15
>>>>>>>>>
>>>>>>>>>> Dear Gwenaelle,
>>>>>>>>>
>>>>>>>>>> Thank you again!
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> I tried it out, however,
>> and
>>>> again i
>>>>> got 6
>>>>>>> timepoints
>>>>>>>>> in
>>>>>>>>>
>>>>>>>>>> the 4d template.
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> I decided to copy my
>> directory
>>>>> structure,
>>>>>>> maybe
>>>>>>>>> something
>>>>>>>>>
>>>>>>>>>> is wrong here, although i
>> could
>>>> not
>>>>> find
>>>>>>> what:
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> vbmAga:
>>>>>>>>>
>>>>>>>>>>
>>>>> template list
>>>>>>>>> (containing:
>>>>>>>>>
>>>>>>>>>> 1101_struc.img
>>>>>>>>>
>>>>>>>>>> 1110_struc.img)
>>>>>>>>>
>>>>>>>>>>
>>>> struc:
>>>>>>>>>
>>>>>>>>>> 1101_struc.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1101_struc.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1101_struc_GM.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1101_struc_GM_to_T.mat
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1101_struc_GM_to_T.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_GM_to_T_init.mat
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_GM_to_T_init.nii
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_GM_to_T_init_warp.msf
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_GM_to_T_init_warp.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>> 1101_struc_GM_to_template_GM_init.log
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1101_struc_brain.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1101_struc_brain.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_brain_mixeltype.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_brain_pve_0.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_brain_pve_2.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1101_struc_brain_pveseg.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1101_struc_brain_seg.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1110_struc.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1110_struc.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1110_struc_GM.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1110_struc_GM_to_T.mat
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1110_struc_GM_to_T.nii
>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_GM_to_T_init..mat
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_GM_to_T_init.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_GM_to_T_init_warp.msf
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_GM_to_T_init_warp.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>> 1110_struc_GM_to_template_GM_init.log
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1110_struc_brain.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1110_struc_brain.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_brain_mixeltype.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_brain_pve_0.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_brain_pve_2.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1110_struc_brain_pveseg.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1110_struc_brain_seg.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1112_struc.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1112_struc.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1112_struc_GM.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1112_struc_GM_to_T.mat
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1112_struc_GM_to_T.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_GM_to_T_init.mat
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_GM_to_T_init.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_GM_to_T_init_warp.msf
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_GM_to_T_init_warp.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>> 1112_struc_GM_to_template_GM_init.log
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1112_struc_brain.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>> 1112_struc_brain.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_brain_mixeltype.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_brain_pve_0.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_brain_pve_2.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>> 1112_struc_brain_pveseg..nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1112_struc_brain_seg.nii
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> fslvbm2a
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Is it possible that
>> fslvbm
>>>> doesnt
>>>>> "like" the
>>>>>>>>> ANALYZE
>>>>>>>>>
>>>>>>>>>> format?
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Thank you, best,
>>>>>>>>>
>>>>>>>>>> Aga
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> -----Ursprüngliche
>>>> Nachricht-----
>>>>>>>>>
>>>>>>>>>> Von: FSL - FMRIB's
>> Software
>>>> Library
>>>>> im
>>>>>>> Auftrag
>>>>>>>>> von
>>>>>>>>>
>>>>>>>>>> Gwenaëlle DOUAUD
>>>>>>>>>
>>>>>>>>>> Gesendet: Di 2009-09-15
>> 16:09
>>>>>>>>>
>>>>>>>>>> An: FSL@JISCMAIL.AC..UK
>>>>>>>>>
>>>>>>>>>> Betreff: Re: [FSL] Re :
>> [FSL]
>>>> FSL-vbm:
>>>>> how do
>>>>>>> i know
>>>>>>>>> that
>>>>>>>>>
>>>>>>>>>> template_list was read?
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Hi Aga,
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> you should have only 3
>> then 2
>>>>> timepoints in
>>>>>>> your 4D
>>>>>>>>>
>>>>>>>>>> template with the newer
>> versions
>>>> of
>>>>> FSL-VBM.
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>> 1101_struc.img
>>>>>>>>>
>>>>>>>>>>> 1101_struc.hdr
>>>>>>>>>
>>>>>>>>>>> 1110_struc.img
>>>>>>>>>
>>>>>>>>>>> 1110_struc.hdr
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> This might be the
>> problem....
>>>> Just try
>>>>> with:
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> 1101_struc.img
>>>>>>>>>
>>>>>>>>>> 1110_struc.img
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> in your template list and
>> this
>>>> should
>>>>> work
>>>>>>> fine.
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>> Cheers,
>>>>>>>>>
>>>>>>>>>> Gwenaelle
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
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|