Hi,
Do you have any errors in the log files?
If so, please send us the contents of these files.
If you do not see anything in FSLView then nothing else can
possibly work. Looking at the output in FSLView is the most
essential thing to do. If you are not seeing anything in this
or in the *_origsegs.nii.gz file then we should investigate
your dataset. If this is the case then please send us the
data via our upload site.
All the best,
Mark
On 1 Sep 2009, at 17:57, diagnostico imagenes wrote:
> Hi Mark
>
> still not able to run the program
>
> steps Download
>
> [ ]$ wget http://www.fmrib.ox.ac.uk/fsldownloads/patches/first_boundary_corr
> [ ]$ su
> [root ]$ cp first_boundary_corr /usr/local/FSL/bin/
>
> replace yes or not ?>> Yes
>
> in fsl/bin/
> [root ]$ ls
> with "ls", I have first_boundary_corr in color black, then
> [root ]$ chmod 777 first_boundary_corr
> [root ]$./first_boundary_corr
> [root ] ls
> with "ls", I have first_boundary_corr in color green.
>
> [root ] exit
> --------------------------------------------------------------------------------------------
>
> I run:
> [Servicio@Servicio first]$ run_first_all -i con01 -o output
>
> and generate:
>
>
> con01.nii.gz output-L_Pall_first.vtk
> con01_to_std_sub.mat output-L_Puta_first.bvars
> con01_to_std_sub.nii.gz output-L_Puta_first.vtk
> output_all_fast_origsegs.nii.gz
> output_all_fast_firstseg.nii.gz
> output-L_Thal_first.bvars
> output-BrStem_first.bvars output-L_Thal_first.vtk
> output-BrStem_first.vtk output-R_Accu_first.bvars
> output.com output-R_Accu_first.vtk
> output-R_Amyg_first.bvars
> output-R_Amyg_first.vtk
> output-L_Accu_first.bvars output-R_Caud_first.bvars
> output-L_Accu_first.vtk output-R_Caud_first.vtk
> output-L_Amyg_first.bvars output-R_Hipp_first.bvars
> output-L_Amyg_first.vtk output-R_Hipp_first.vtk
> output-L_Caud_first.bvars output-R_Late_first.bvars
> output-L_Caud_first.vtk output-R_Late_first.vtk
> output-L_Hipp_first.bvars output-R_Pall_first.bvars
> output-L_Hipp_first.vtk output-R_Pall_first.vtk
> output-L_Late_first.bvars output-R_Puta_first.bvars
> output-L_Late_first.vtk output-R_Puta_first.vtk
> output.logs output-R_Thal_first.bvars
> output-L_Pall_first.bvars output-R_Thal_first.vtk
> ---------------
> and I have run volumen de Hipp ...
>
> [ ]$ fslstats output_all_fast_firstseg.nii.gz -l 16 -u 18 -V
>
> return
> [ ]$ out of memory error
>
> I do not understand
>
> I have notebook core 2 duo t8100 (2.1 Ghz) with 4Gb Ram 667
>
> &
> [ ]$fslview output_all_fast_firstseg.nii.gz
> not draw anything
> Ingresá a tu Hotmail desde tu Messenger. ¡Windows Live hace tu vida
> más simple!
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