Hi Aga,
you should have only 3 then 2 timepoints in your 4D template with the newer versions of FSL-VBM.
> 1101_struc.img
> 1101_struc.hdr
> 1110_struc.img
> 1110_struc.hdr
This might be the problem... Just try with:
1101_struc.img
1110_struc.img
in your template list and this should work fine.
Cheers,
Gwenaelle
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