I apologize for what I am sure is a basic question, but I am relatively new to
FSL. I want to calculate both number of active voxels and % change in two
ROIs from the same brain and compare them. I have created the ROIs by
cropping the MNI2mmbrain mask and would like to run this analysis on the
standard brain used in my FEAT analysis. However when select the FEAT
directory and try to run featquery on it it tells me that the mask does not
match any of the images in that directory. I know that my data was
upsampled to the MNI2mm standard brain and the transform files should all be
present. What am I messing up/leaving out/compeltely unaware of?
Thanks.
-Gad
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