There's more than one way to do this, but I think fslstats can be used to
give this information from the segmented volumes (please correct me if I am
fslstats yourfile_all_fast_firstseg.nii.gz -l 16 -u 18 -V
returns the volume in the left hippocampus (in voxels and cubic mm). The
numbers 16 and 18 refer to the structure being measured
e.g., 17 is left hippocampus, so we threshold the volume at 16 and 18 (non
inclusive) and measure the associated volume.
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of diagnostico imagenes
Sent: 06 August 2009 15:38
To: [log in to unmask]
Subject: [FSL] First Volumen?
My name is Nicolas (Student of Biomedical engineering)
I am learning to use the FSL-VBM & FIRST
my question is:
where First reported segmentation of the volume?
run_first_all image.nii.gz 4 outputimage
I do not understand-->
first_roi_slicesdir image.nii.gz <and here?>
first_roi_slicesdir image.nii.gz outputimage_L_Hip ??
I am wanting to know how much is the volume of the segmentation of the
Thank you very much for your time,
Yours sincerely, Nico
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