Also I would like to point out that when I ran tbss_2_reg -T in 4.1.4
is an error. It was failing to get to -T, but was fine for -n.
We moved the
/bin/rm -f FA/.commands somewhere else and it appears to works now.
[ "$1" = "" ] && Usage
echo [`date`] [`hostname`] [`uname -a`] [`pwd`] [$0 $@] >> .tbsslog
/bin/rm -f FA/.commands
if [ $1 = -n ] ; then
Vanessa Lim (PhD)
University of Auckland
Private Bag 92019
Auckland, New Zealand
On 8/12/09 11:28 AM, "Saad Jbabdi" <[log in to unmask]> wrote:
> Hi Vanessa,
> You need to create your own transform files for your own data.
> You can use the GUI for that. Please read the appropriate section in
> the doc: www.fmrib.ox.ac.uk/fsl/fdt/fdt_reg.html
> On 12 Aug 2009, at 13:17, Vanessa Lim wrote:
>> Earlier I posted that I didn't get any files using 4.1.4 from my
>> "Queuing post processing stage" with Terminal error but I was wrong
>> I did get bedpostX
>> directory with what look have the same file names as the tutorial,
>> although I have a few
>> extra (commands.txt, logs folder, monitor).
>> When I went to run "vecreg -i dyads1 -o dyads1_to_standard -r
>> $FSLDIR/data/standard/MNI152_T1_2mm -t xfms/diff2standard.mat"
>> I couldn't because in my xfms folder I only have an eye.mat and no
>> others (i.e. in the
>> tutorial folder there is also diff2standard.mat, diff2str,
>> standard2diff, standard2str etc).
>> Can I just copy the files from the tutorial xfms folder or is the
>> bedpostx supposed to
>> generate these for each individual subject?
>> I've run 4 dti sessions and all 4 only have xmfs with eye.mat. 2 of
>> the 4 had the
>> "queuing post processing stage" then Done! and 2 didn't.
> Saad Jbabdi
> University of Oxford, FMRIB Centre
> JR Hospital, Headington, OX3 9DU, UK
> +44 (0) 1865 222523 (fax 717)