The logs should be in a directory *.logs and you want
to look at all files *.e* as these contain the error messages.
All the best,
On 14 Aug 2009, at 16:59, Buyean Lee wrote:
> Hi Mark,
> Where can I find the error logs?
> -----Original Message-----
> From: Mark Jenkinson <[log in to unmask]>
> To: [log in to unmask]
> Sent: Fri, Aug 14, 2009 6:11 am
> Subject: Re: [FSL] Strange FIRST (FSL 4.1.4) error - missing output
> Can you send us the details in the error logs?
> We need to see why the brainstem segmentation is failing.
> All the best,
> On 13 Aug 2009, at 21:33, Buyean Lee wrote:
> > Hi,
> > Strangely, FIRST ('run_first_all') does not generate the output >
> files (both *_all_fast_firstseg.nii and *_all_fast_origsegs.nii) of
> > a few MRIs (5/92 MRIs).
> > I believe this is due to the fact that FIRST failed to generate >
> *_BrStem.* files of those 5 MRIs (this is why it can't run fslmerge
> > in the 'run_first_all' script).
> > Buyean