you just need to name your successful brain extractions "*_struc_brain.nii" (none of the mask, skull and cut images are used in the following).
--- En date de : Jeu 13.8.09, Agnieszka Burzynska <[log in to unmask]> a écrit :
> De: Agnieszka Burzynska <[log in to unmask]>
> Objet: [FSL] Fslbvm_1_bet: can I use brain-extracted images from other analysis?
> À: [log in to unmask]
> Date: Jeudi 13 Août 2009, 16h08
> Dear all,
> After running fslvbm_1_bet I see that bet didnt work for
> some subjects (neck
> is still included), even if I added some other options
> after -N.
> I have brain-extracted T1 images of these subjects from
> another analysis.
> Could I just replace the unscucessful vbm-bet images with
> these images,
> giving them fsl-vbm-related names?
> Do next steps of fsl-vbm use other files than
> xx_struc_brain.nii (e.g.
> xx_struc_brain_mask.nii, xx_struc_brain_skull.nii or
> Knowing this would be very helpful!
> Thank you,