I am using fslvbm for the first time, hence this basic question.
The T1-WI in my vbm directory were in ANALYZE format. After running
fslvbm_1_bet, in struc directory, _struc. Files are still in ANALYZE, but
_struc_brain. And _struc_cut are in NIFTI.
How should my template_list look like? Is the fileformat a problem? Should
it match filenames in vbm directory or struc subdirectory? Or can I leave
the file extension out and list the Ids only?