You need to create your own transform files for your own data.
You can use the GUI for that. Please read the appropriate section in
the doc: www.fmrib.ox.ac.uk/fsl/fdt/fdt_reg.html
On 12 Aug 2009, at 13:17, Vanessa Lim wrote:
> Earlier I posted that I didn't get any files using 4.1.4 from my
> "Queuing post processing stage" with Terminal error but I was wrong
> I did get bedpostX
> directory with what look have the same file names as the tutorial,
> although I have a few
> extra (commands.txt, logs folder, monitor).
> When I went to run "vecreg -i dyads1 -o dyads1_to_standard -r
> $FSLDIR/data/standard/MNI152_T1_2mm -t xfms/diff2standard.mat"
> I couldn't because in my xfms folder I only have an eye.mat and no
> others (i.e. in the
> tutorial folder there is also diff2standard.mat, diff2str,
> standard2diff, standard2str etc).
> Can I just copy the files from the tutorial xfms folder or is the
> bedpostx supposed to
> generate these for each individual subject?
> I've run 4 dti sessions and all 4 only have xmfs with eye.mat. 2 of
> the 4 had the
> "queuing post processing stage" then Done! and 2 didn't.
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