Hello,
Im trying to generate cluster report with names of the structures from the
Harvard-Oxford Cortical Structural atlas, and Im having trouble with the
coordinates of the clusters. I used cluster to generate cluster report, then
I input the coordinates from the report into atlasquery, but the results do
not correspond to locations I see in FSLview. For example, a leg portion of
the M1 gets named as Heschl's gyrus. All of my images are in MNI space.
Does atlasquery expect voxel or mm coordinates? I tried to use mm
coordinates, but I get an error of invalid entry (Im assuming it is because
of the negative sign of the coordinates).
Sincerely,
Anastasia
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