> Re (3), I might have been unclear in formulating my question. I
> always generate flow fields from rc* files, but I was unsure if flow
> fields should be applied to images (eg T1 or Jacobians from HDW)
> aligned with rc* files or images aligned to c* files. The guide seems
> to imply rc* files, but it seems that in actuality it is c* files.
Use images aligned with c* files. I guess I'll have to take a look at
the guide to try to make it a bit more clear.
John Ashburner <[log in to unmask]>