Dear Mara,
thanks for letting me know. And also nice for me to know that for once
it wasn't fnirt's fault ;-)
Jesper
On 20 Jun 2009, at 19:07, SUBSCRIBE FSL Anonymous wrote:
> On Sat, 20 Jun 2009 09:37:07 +0100, Jesper Andersson <[log in to unmask]
> >
> wrote:
>
>> Dear Mara,
>>
>>> It looks like in these cases FNIRT has not finished. In the
>>> registration
>>> summary html page there are only images for "Registration of
>>> example_func to
>>> highres" and no images for
>>>
>>> Summary registration, FMRI to standard space
>>> Registration of highres to standard
>>> Registration of example_func to standard
>>>
>>> that are also usually included.
>>>
>>> I've attached the report_log.html - please let me know if you need
>>> other
>>> information.
>>
>> it does look from your log-file that things have ended prematurely.
>> Are you sure this is related to the presence/absence of that warning?
>> My guess is that it is not, and that if you had a look in the logs of
>> some of the successful runs you would find warnings in some of those
>> too.
>>
>> Did you run this as a batch, and if so would you have the error-log
>> file from that? If not, could you please upload structural that you
>> are trying to register and the pertinent .mat file from flirt
>> (highres2standard.mat) and then mail me the reference number that you
>> are given?
>>
>> Jesper
>>
>>
>
> The only ones with error messages were run as a batch in parallel on a
> multi-core machine and from looking at the dates on the files, it
> looks like
> all three of them with the error terminated at the same time. When I
> reran
> them, they were fine and did not generate the error again.
>
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