Hi,
Do you have any files like *_firstseg.nii.gz or *_origsegs.nii.gz ?
These should be the images that you will calculate the volume
from. Note that they do not start with the structure names as
they contain all the structures in them.
If you do not have these files please look at the *.e* files in
the log directory and see if there are any error messages.
All the best,
Mark
On 22 Jun 2009, at 19:49, Nick Papanikolaou wrote:
> Dear Mark,
>
> Thanks for your fast response. I tried the run_first_all and all I
> get is some .vtk and .bvars
> files. Any idea how can I proceed to calculate the volumes?
>
> Nick
>
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