Hi,
If you were trying to re-run a job created with ccp4 6.1.0 or earlier,
this is a known bug. Have a look at:
http://www.ccp4.ac.uk/problems.php#6.1.1-programs
If that is the case, there is a new refmac.tcl file that solves that
problem.
Best,
Miguel
Le 16 mai 09 à 12:42, Kay Diederichs a écrit :
> Boaz,
>
> I recently saw the same message, after installing (binary) 6.1.1 .
> The workaround that seems to work for me is to start a new project
> from scratch.
>
> The "STARTING" problem may have to do with the line
> 127.0.0.1 localhost.localdomain localhost
> missing from /etc/hosts - did you check that?
>
> HTH,
>
> Kay
>
> Boaz Shaanan schrieb:
>> Hi,
>> On a newly installed v 6.1.1 I (built from source) I can't get
>> refmac to start from the gui (other programs, such as pointless and
>> phaser, run fine). The latest patches have also been installed.
>> When I start a refmac job that runs file under 6.1.0 (the binary
>> built) the job gets stuck and the gui reports 'starting' for the
>> job without switching to 'running'. The latest refmac version from
>> York is installed (5.0.92) and again, it runs fine under 6.1.0.
>> These lines appear in the window from which the ccp4i was launched
>> after starting the job:
>> can't set "ATOM(0)": variable isn't array
>> while executing
>> "set [subst $root]([subst $indx0]) """
>> (procedure "ExecuteScript" line 50)
>> invoked from within
>> "ExecuteScript $system(SCRIPT)"
>> ("script" arm line 8)
>> invoked from within
>> "switch $system(RUN_MODE) \
>> script {
>> source [file join $env(CCP4I_TOP) src execute.tcl]
>> source [file join $env(CCP4I_TOP) src job_utils..."
>> (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish.tcl" line 145)
>> invoked from within
>> "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
>> (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish" line 12)
>> Does anybody have a clue on what could have gone wrong and how to
>> fix the problem ?
>> Thanks,
>> Boaz
>> Boaz Shaanan, Ph.D.
>> Dept. of Life Sciences
>> Ben-Gurion University of the Negev
>> Beer-Sheva 84105
>> Israel
>> Phone: 972-8-647-2220 ; Fax: 646-1710
>> Skype: boaz.shaanan
>>
>
>
--
Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
Case 932
163 Avenue de Luminy
13288 Marseille cedex 9
France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: [log in to unmask]
Web: http://www.pangea.org/mol/spip.php?rubrique2
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