Thank you John for the answer, but that is not my problem. I want to
write the images (bias corrected anatomical and the functional) in the
MNI space (warped). Is that possible with normalise write after creating
a *_sn.mat file from the *_seg8.mat file using a script or is the DARTEL
toolbox the right way to use the information (deformation field)?
Best regards,
Michael.
John Ashburner schrieb:
> There are a couple of slight bugs in the new segmentation user interface,
> which will be ironed out in the next set of updates. Currently, when you
> specify that the segmentation should write out a bias corrected image, it
> writes out the bias field. If you request the bias field, then it writes out
> the bias corrected image (note similar behaviour when you request backward
> and forward spatial transform files).
>
> If you have run the segmentation, and then want a bias corrected image, then
> take a look at around line 112 of spm_preproc_run.m for clues about how to do
> this.
>
> Best regards,
> -John
>
>
> On Monday 18 May 2009 22:24, Michael Erb wrote:
>> Hi John (or other well informed people),
>> can you tell me how I can apply the normalisation parameter in
>> *_seg8.mat to write the bias corrected anatomical and the functional
>> images?
>>
>> Best regards,
>> Michael.
>
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Dr. Michael Erb
Sektion f. experimentelle Kernspinresonanz des ZNS
Abteilung Neuroradiologie, Universitaetsklinikum
Hoppe-Seyler_Str. 3, D-72076 Tuebingen
Tel.: +49(0)7071/2987753 priv. +49(0)7071/61559
Fax.: +49(0)7071/294371
e-mail: <[log in to unmask]>
www: http://www.medizin.uni-tuebingen.de/nrad/sektion/
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