Hi,
thank you for the quick reply, but since I have 3 first-level analyses and
therefore 3
separate reg/standard2highres.mat -files for this subject, I'm still
wondering whether it
is OK to use any of those files with registration information. Somehow I
thought that
these 3 standard2highres.mat -files are not identical, but contain at least
small
differences. Can I assume that the differences are small enough to be
ignored and will
not affect the results?
Virve
Date: Tue, 26 May 2009 10:37:05 +0100 [12:37:05 PM EEST]
From: "Martin M Monti" <[log in to unmask]>Add
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Subject: Re: [FSL] Higher-level analysis for one subject
Vivre,
the file you are looking for is in the first level analysis folders: e.g.
1stlevel.feat/reg/standard2highres.mat
type 'flirt' in your terminal window, the third example is probably what you
want to use.
Something like:
flirt -in highlevel.gfeat/thresh_zstat1 -ref highres_image -out
thresh_zstat1_2_highres
-init 1stlevel.gfeat/reg/standard2highres.mat -applyxfm
cheers
martin
Virve Vuontela wrote:
[Hide Quoted Text]
Dear FSL community,
I have run first-level FEAT analyses for one subjects's three fMRI runs and
after that followed the instructions in your FAQ page to combine these runs
in a higher-level FEAT analysis and this worked fine so far. But now I need
to put the results of the higher-level analysis on the subject's own high
resolution brain. How to accomplish this? It seems that all copes in the
gfeat-folder are already in the standard space and there is only one
mat-file which probably does not include information of the registration
part of the analysis...? Thank you for your help in advance!
Virve Vuontela
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