Hi - it's still not clear why the .nii suffices are appearing in the
middle of the processed filenames - if you could email me directly
your fslvbm2a and fslvbm2a.e7935.30 and template_list (if you have
one) files as well as the _full_ listing of the directory that may help.
Cheers.
On 14 May 2009, at 19:37, Veena Nair wrote:
> Thanks Steve.
> Typed in ls -lrt and got the following (part of it listed below, get
> this
> for all
> the 8 subjects in the 'my_fsl_vbm' folder). The original files in
> 'my_fsl_vbm' had names PAT_GK.nii, CON_KB.nii etc.
>
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.30
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.29
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.28
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.27
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.26
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.25
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.24
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.23
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.o7935.22
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:08 fslvbm2a.e7935.31
> -rw-r--r-- 1 gkirk gkirk 621 2009-05-14 10:08 fslvbm2a.e7935.30
> -rw-r--r-- 1 gkirk gkirk 591 2009-05-14 10:08 fslvbm2a.e7935.29
> -rw-r--r-- 1 gkirk gkirk 597 2009-05-14 10:08 fslvbm2a.e7935.28
> -rw-r--r-- 1 gkirk gkirk 633 2009-05-14 10:08 fslvbm2a.e7935.27
> -rw-r--r-- 1 gkirk gkirk 651 2009-05-14 10:08 fslvbm2a.e7935.26
> -rw-r--r-- 1 gkirk gkirk 645 2009-05-14 10:08 fslvbm2a.e7935.25
> -rw-r--r-- 1 gkirk gkirk 645 2009-05-14 10:08 fslvbm2a.e7935.24
> -rw-r--r-- 1 gkirk gkirk 609 2009-05-14 10:08 fslvbm2a.e7935.23
> -rw-r--r-- 1 gkirk gkirk 669 2009-05-14 10:08 fslvbm2a.e7935.22
> -rw-r--r-- 1 gkirk gkirk 344446 2009-05-14 10:18
> CON_KB.nii_struc.nii_brain_seg.nii.gz
> -rw-r--r-- 1 gkirk gkirk 752016 2009-05-14 10:18
> CON_KB.nii_struc.nii_brain_pve_0.nii.gz
> -rw-r--r-- 1 gkirk gkirk 1240383 2009-05-14 10:18
> CON_KB.nii_struc.nii_GM.nii.gz
> -rw-r--r-- 1 gkirk gkirk 639244 2009-05-14 10:18
> CON_KB.nii_struc.nii_brain_pve_2.nii.gz
> -rw-r--r-- 1 gkirk gkirk 347071 2009-05-14 10:18
> CON_KB.nii_struc.nii_brain_pveseg.nii.gz
> -rw-r--r-- 1 gkirk gkirk 401724 2009-05-14 10:18
> CON_KB.nii_struc.nii_brain_mixeltype.nii.gz
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.41
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.40
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.39
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.38
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.37
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.36
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.35
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.34
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.33
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.o7935.32
> -rw-r--r-- 1 gkirk gkirk 0 2009-05-14 10:18 fslvbm2a.e7935.41
> -rw-r--r-- 1 gkirk gkirk 621 2009-05-14 10:18 fslvbm2a.e7935.40
> -rw-r--r-- 1 gkirk gkirk 591 2009-05-14 10:18 fslvbm2a.e7935.39
> -rw-r--r-- 1 gkirk gkirk 597 2009-05-14 10:18 fslvbm2a.e7935.38
> -rw-r--r-- 1 gkirk gkirk 633 2009-05-14 10:18 fslvbm2a.e7935.37
> -rw-r--r-- 1 gkirk gkirk 651 2009-05-14 10:18 fslvbm2a.e7935.36
> -rw-r--r-- 1 gkirk gkirk 645 2009-05-14 10:18 fslvbm2a.e7935.35
> -rw-r--r-- 1 gkirk gkirk 645 2009-05-14 10:18 fslvbm2a.e7935.34
> -rw-r--r-- 1 gkirk gkirk 609 2009-05-14 10:18 fslvbm2a.e7935.33
> -rw-r--r-- 1 gkirk gkirk 669 2009-05-14 10:18 fslvbm2a.e7935.32
> -rw-r--r-- 1 gkirk gkirk 314719 2009-05-14 10:27
> PAT_GK.nii_struc.nii_brain_seg.nii.gz
> -rw-r--r-- 1 gkirk gkirk 688806 2009-05-14 10:27
> PAT_GK.nii_struc.nii_brain_pve_0.nii.gz
> -rw-r--r-- 1 gkirk gkirk 1119671 2009-05-14 10:27
> PAT_GK.nii_struc.nii_GM.nii.gz
> -rw-r--r-- 1 gkirk gkirk 576879 2009-05-14 10:27
> PAT_GK.nii_struc.nii_brain_pve_2.nii.gz
> -rw-r--r-- 1 gkirk gkirk 317708 2009-05-14 10:27
> PAT_GK.nii_struc.nii_brain_pveseg.nii.gz
> -rw-r--r-- 1 gkirk gkirk 362021 2009-05-14 10:27
> PAT_GK.nii_struc.nii_brain_mixeltype.nii
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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