Hi Mohinda,
I guess you would need to edit the tbss_deproject script...
The second step assumes that your warpfield is called bla_FA_to_target_warp (line 112-123), which might not be the name of the composition of your combination of warps.
Cheers,
Gwenaelle
--- En date de : Ven 1.5.09, Mahinda Yogarajah <[log in to unmask]> a écrit :
> De: Mahinda Yogarajah <[log in to unmask]>
> Objet: [FSL] convertwarp and invwarp
> À: [log in to unmask]
> Date: Vendredi 1 Mai 2009, 18h25
> Dear Experts,
>
> I am using fsl 4.1.3. I am trying to use tbss_deproject2
> with some TBSS
> results. tbss_deproject1 works fine suggesting that the
> process of skeleton
> space to all_FA space works ok.
>
> tbss_deproject2 results in voxels that are clearly in the
> wrong place. Some
> of the subjects in my study have had a combined warp
> (generated from
> convertwarp) applied, rather than a standard
> subject_to_target warp. I am
> therefore wondering whether invwarp in the deproject script
> will work as it
> is meant to ?
>
> Thanks.
>
> Mahinda
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