Morning All,
I've been using ccpnmr to assign some noesy data. It's a project that
I imported from an old ansig session. Everything has been working fine
for some months now except this morning when I couldn't open the
project and was greeted by the message pasted below. Last night the
saving and shutting down of ccpnmr was uneventful. If I try and open
the project from inside analysis (i.e. file->open project') then the
browser pop-up says the project was OK at 19h26 last night, which was
when I shut things down.
I have an externally backed up version but it doesn't include the most
recent changes to the project.
I'm using a MacBook aluminium with OS X 10.5.6 running CCPNMR 2.0.6
which I think I downloaded as the pre-installed version
(analysis2.0.5.1_intel.tgz) and then updated.
Thanks in advance
Michael
Here's the error, which I get with a pop-up that says roughly the same
thing:
12-40C/analysis [macbook]% analysis 1240C
Model read finished. Duration 1.35361385345
Model validity check skipped
CcpNmr Analysis Version 2.0. Release 6 (Copyright 2003-2009 CCPN)
Distribution created Wed Jan 28 17:39:59 2009
If you use this software, please quote the following reference:
Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne
Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides
and Ernest D. Laue (2005). The CCPN Data Model for NMR Spectroscopy:
Development of a Software Pipeline. Proteins 59, 687 - 696.
The FAQ is at: http://www.ccpn.ac.uk/ccpn/software/ccpnmr-analysis/faq
For further help see the mailing list: http://www.jiscmail.ac.uk/ccpnmr
Error during Std link dereferencing. Object was:
<ccp.nmr.Nmr.DataSource ['1240C', 11, 1]>
values were: ['_51045']
tag name was: activePeakList
Error loading file for: <ccp.nmr.Nmr.NmrProject ['1240C']>
Reading: <open file '/Users/michaelplevin/12-40C/analysis/1240C/ccp/
nmr/Nmr/1240C+1240C_michaelplevin_2009-03-09-17-10-21-618_00001.xml',
mode 'r' at 0x498c338>
Last xml tag read: _StorageUnit
Parser state was: postprocessing data
Object stack was empty
Traceback (most recent call last):
File "/Applications/Darwin/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
AnalysisGui.py", line 224, in <module>
main(projectDir, max_size, glDirect)
File "/Applications/Darwin/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
AnalysisGui.py", line 102, in main
project = loadProject(top, path=projectDir)
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/ccp/gui/Io.py", line 90, in loadProject
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/ccp/api/general/DataLocation.py", line 4485, in
getNmrDataSources
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/api/Implementation.py", line 5036, in load
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/api/Implementation.py", line 5070, in loadFrom
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/format/xml/XmlIO.py", line 236, in loadTopObject
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/format/xml/XmlIO.py", line 267, in
loadFromStream
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/xml/Implementation.py", line 4761, in
loadFromStream
File "/Applications/Darwin/ccpnmr/temporaryReleaseDir/ccpnmr/
ccpnmr2.0/python/memops/xml/Implementation.py", line 5030, in
delayedLoadLinksStd
memops.general.Implementation.ApiError: Linked-to object with ID not
found: <ccp.nmr.Nmr.DataSource ['1240C', 11, 1]>:activePeakList:_51045
>>> 12-40C/analysis [macbook]%
|