I would recommend Modeller
http://www.salilab.org/modeller/
Wai
> Suppose I have two proteins A and B, they are structurally homologous,
> however the sequence identity is only about 20%. A has crystal
> structure available, so if I want to model protein B, what's the best
> way to do it? I don't think I can just thread the sequence of B to A
> structure because the number of residues are different and there might
> be gaps and insertions in the alignment. Any suggestions of good programs?
>
--
Yu Wai Chen, PhD........................................Lecturer
King's College London, Randall Division +44-207-848-8206
New Hunt's House, Guy's Campus, London SE1 1UL, U.K.
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