Hi Garth,
what is the result of an ls on your stats/ directory? And fslinfo on mean_FA.nii.gz?
Cheers,
Gwenaelle
--- En date de : Mer 29.4.09, Garth Coombs III <[log in to unmask]> a écrit :
> De: Garth Coombs III <[log in to unmask]>
> Objet: Re: [FSL] Re : [FSL] tbss steps 2 and 3 errors
> À: [log in to unmask]
> Date: Mercredi 29 Avril 2009, 17h06
> Hi Gwenaelle and FSL experts,
>
> Thanks for your previous help. I have now gotten my data
> through all three
> tbss processing steps without errors. However, when I try
> to view my mean_FA
> and all_FA images, I'm running into some issues that
> I'm hoping someone may
> be able to help with.
>
> When I try:
>
> cd stats
> fslview $FSLDIR/data/standard/MNI152_T1_1mm mean_FA -l
> Red-Yellow -b 0.2, 0.6
>
> it opens the MNI brain and then pops up an error message
> saying "Missing
> header/image file." When I click "Ok", it
> pops up the same message again,
> and then it covers the MNI brain with a yellow box.
>
> If I then try:
>
> fslview all_FA mean_FA_skeleton -l Green -b 0.2, 0.6
>
> it brings up my all_FA (which looks good) and then pops up
> the "Missing
> header/image file" error. It then puts the
> mean_FA_skeleton over the all_FA
> image. While it looks like everything worked and the major
> tracts are
> aligned, I'm not exactly sure what it's supposed to
> look like, so I don't know
> if it looks correct or not (see attachment).
>
> Assuming everything is correct except the "Missing
> header/image file" error,
> which header and image files do I need and do I put them in
> the /tbss folder
> or the /FA folder?
>
> Thanks again for all the help!
>
> -Garth
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