Hi Alex
Are you running probtrackx from the command line? In that case, you
need to add the --opd option in order to get the output connectivity
map.
Cheer,
Saad.
On 20 Apr 2009, at 20:38, Alex Baria wrote:
> Hi,
>
> I'm new to FSL and attempting to do some DTI analysis. When I run the
> probtrackx tool for a single mask I understand I am supposed to get
> a couple
> log files and an image file of the connectivity of the seed mask.
> However,
> when I run this, the only output I am getting is the probtrackx.log
> file.
> There is no error message or anything. It just runs for a second
> and that's
> all there is. I have also tried doing the same thing with only a
> single
> voxel and I continue to get no image file. Can anyone please help me?
>
> Thanks,
> Alex
>
Saad Jbabdi
Oxford University FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
+44 (0) 1865 222545 (fax 717)
www.fmrib.ox.ac.uk/~saad
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