Hi,
I just wanted to mention a small issue, which I found while using FSL and
FreeSurfer.
Here is what I have done:
1. mri_convert -i brainmask.mgz -o brainmask.nii.gz
2. fslswapdim brainmask.nii.gz x z -y brainmask.axial.nii.gz (reslice to
axial)
Now when I load brainmask.mgz (or brainmask.nii.gz) and brainmask.axial.nii.gz
to tkmedit there is a 1 voxel shift in inferior to superior direction.
I discussed this with Dough from FS and we agree that this could rather be a
problem in fslswapdim than in FreeSurfer.
Best,
Martin
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