Following these problems with the stand-alone version, I did a load of
fink updatery (which I always find pretty confusing), ending up with
"fink -b install coot" which has now installed coot 0.6-pre-1-1941.
This version (/sw/bin/coot) works OK, though the fonts in the menus
etc are different & smaller than I had before in 0.5.2 (which worked
from the stand-alone install in /usr/local/xtal/coot)
Just one warning in start-up
Loading: shelx.py
/sw/share/coot/python/shelx.py:580: SyntaxWarning: import * only
allowed at module level
def read_shelx_project(file_name):
still confused, but this will do
thanks
Phil
On 29 Mar 2009, at 19:02, Phil Evans wrote:
> On 29 Mar 2009, at 17:11, Ralf W. Grosse-Kunstleve wrote:
>
>> Hi Bill,
>>
>>> Phil Evans is having the problems you reported earlier with this
>>> one.
>>> So I am completely stumped.
>>>
>>> I'd like to figure out what is different between your installation
>>> and
>>> his. What X11 version,
>>
>> XQuartz 2.3.1 (xorg-server 1.4.2-apple17)
>
> Same for me
>
>>
>>
>>> OS X version
>>
>> % sw_vers
>> ProductName: Mac OS X
>> ProductVersion: 10.5.6
>> BuildVersion: 9G55
>
> Mac OS X 10.5.6 (9G55)
>
>>
>>
>>> and machine are you using, and
>>
>> Model Name: MacBook Pro
>> Model Identifier: MacBookPro4,1
>> Processor Name: Intel Core 2 Duo
>> Processor Speed: 2.5 GHz
>> Number Of Processors: 1
>> Total Number Of Cores: 2
>
> Model Name: MacBook Pro 15"
> Model Identifier: MacBookPro2,2
> Processor Name: Intel Core 2 Duo
> Processor Speed: 2.33 GHz
> Number Of Processors: 1
>
>
>>
>>
>>> how do you invoke coot (if from command line, what user shell).
>>
>> source /usr/local/xtal/coot/bin/init.csh
>> coot
>
> /usr/local/xtal/coot/bin/coot
>
>
>>
>>
>>> Do you have $DYLIB_LIBRARY_PATH set, and if so, to what?
>>
>> It was set like this:
>>
>> DYLD_LIBRARY_PATH=/opt/intel/fc/10.1.015/lib
>>
>> coot still works after unsetenv DYLD_LIBRARY_PATH
>
> echo $DYLD_LIBRARY_PATH
> /usr/local/CCP4versions/Clapham/ccp4-6.1.1/share/XIAROOT/xia2//
> binaries/mac_386:/usr/local/CCP4versions/Clapham/ccp4-6.1.1/lib
>
>
>>
>>
>>> Sorry for the bother, but I would like to eliminate this headache.
>>
>> No problem. Let me know if you need anything else.
>>
>> Phil, did you try temporarily moving your .cshrc or .profile or
>> similar?
>
> It still fails without these & with the DYLD_LIBRARY_PATH unset
>
> So it looks very much the same as Ralf's
>
> The previous version that I was running did work OK, it was one of
> Bill Scott's stand-alone builds, but unfortunately I overwrote the
> working version with this one, though I will be able to get it back
> from my backup tomorrow
>
> Phil
|