I did not set a template during normalization. I chose Normalise: Write, using the *seg_sn.mat (from segmentation of the T1) as Parameter File and a*.img files as Images to Write.
I am wondering if it is OK to be using icbm_spm2tal.m to convert the coordinates into Talairach space.
Julie E. McEntee, M.A., C.C.R.P.
Senior Research Program Coordinator
Department of Psychiatry- Neuroimaging
Johns Hopkins University School of Medicine
600 N. Wolfe St./ Phipps 300
Baltimore, MD 21287
----- Original Message -----
From: David M White <[log in to unmask]>
Date: Wednesday, March 18, 2009 9:30 am
Subject: RE: [SPM] fMRI results in MNI or ICBM space?
To: Julie E McEntee <[log in to unmask]>
> What do you have set as your template image during normalization?
> David M. White
> Program Coordinator
> University of Alabama at Birmingham
> Psychiatry - Behavioral Neurobiology
> Neuroimaging and Translational Research Laboratory
> Sparks Center 501F
> (205) 996-9813
> [log in to unmask]
> -----Original Message-----
> From: SPM (Statistical Parametric Mapping) [
> On Behalf Of Julie E McEntee
> Sent: Wednesday, March 18, 2009 7:59 AM
> To: [log in to unmask]
> Subject: [SPM] fMRI results in MNI or ICBM space?
> Hello List,
> I am using SPM5 to preprocess/analyze my fMRI images. The following are
> the preprocessing steps I use:
> 1) realign (mean only)
> 2) slice timing (interleaved aquisition, TR = 2, no gap)
> 3) coregistration estimate T1 and mean functional
> 4) segmentation of T1
> 5) write normalize using parameters generated by segmentation
> 6) smooth using 6 6 6 kernel
> Are the smoothed images in MNI or ICBM space?
> Thank-you for yor help,
> Julie E. McEntee, M.A., C.C.R.P.
> Senior Research Program Coordinator
> Department of Psychiatry- Neuroimaging
> Johns Hopkins University School of Medicine
> 600 N. Wolfe St./ Phipps 300
> Baltimore, MD 21287
> Phone: 410-502-0468
> Fax: 410-614-3676