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FSL  March 2009

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Subject:

Re: FSL download for Ubuntu 8.10 64bit version ?

From:

Michael Hanke <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Tue, 31 Mar 2009 20:34:46 +0200

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (179 lines)

On Tue, Mar 31, 2009 at 06:21:50PM +0000, Jayanth Kolar wrote:
> Hi Michael,
> 
> I am attaching the 'source.list' file. If that is the case , how can I
> enable the 'universe' repositories ?

It is the case. Just remove the '#' characters in the beginning of the
lines. *BUT* only remove _one_ of them -- even if there are two!

Afterwards update the package list and install fsl as you have done
before.


Michael

> On Tue, Mar 31, 2009 at 6:07 PM, Michael Hanke <[log in to unmask]>wrote:
> 
> > Hi,
> >
> > can you please post the content of your /etc/apt/sources.list file?
> >
> > I suspect that you haven't enabled Ubuntu's 'universe' repositories.
> >
> > Michael
> >
> >
> >
> > On Tue, Mar 31, 2009 at 06:00:53PM +0000, Jayanth Kolar wrote:
> > > *Hi Michael,
> > >
> > > Thanks for the link ! I tried installing as per the instructions in the
> > link
> > > you provided but was stuck at  step 3. (I am getting the dependency error
> > > again). A detailed description of the steps I followed are as follows:*
> > >
> > > 1) downloaded the "Intrepid Ibex" APT-configuration file and moved it
> > into
> > > /etc/apt/sources.list.d/
> > >
> > > 2) Typed in the terminal 'sudo aptitude update'
> > > Got the message
> > > 'Fetched 190B in 0s (243B/s)'
> > > 'Reading package lists... Done'
> > >
> > > 3) I proceeded to install the FSL package:
> > >
> > > *I typed in 'sudo aptitude install fsl'
> > > and I got a message saying that fsl and fslview have unmet dependencies
> > and
> > > they wont be installed as below*
> > >
> > > Reading package lists... Done
> > > Building dependency tree
> > > Reading state information... Done
> > > Reading extended state information
> > > Initializing package states... Done
> > > The following packages are BROKEN:
> > >  fsl fslview
> > > The following NEW packages will be installed:
> > >  fsl-atlases{a} fsl-doc{a} fslview-doc{a} libaudio2{a} libnifti1{a}
> > >  libqt3-mt{a} qt3-assistant{a} qt3-doc{a} tcl8.4{a} tk8.4{a}
> > > 0 packages upgraded, 12 newly installed, 0 to remove and 285 not
> > upgraded.
> > > Need to get 118MB of archives. After unpacking 184MB will be used.
> > > *The following packages have unmet dependencies:
> > >  fsl: Depends: libgdchart-gd2-noxpm which is a virtual package. or
> > >                libgdchart-gd2-xpm which is a virtual package.
> > >       Depends: libnewmat10ldbl which is a virtual package.
> > >       Depends: tcsh which is a virtual package. or
> > >                c-shell which is a virtual package.
> > >  fslview: Depends: libnewmat10ldbl which is a virtual package.
> > >           Depends: libqwt4c2 which is a virtual package.
> > >           Depends: libvtk5 which is a virtual package.
> > >           Depends: libvtk5-qt3 which is a virtual package.*
> > > The following actions will resolve these dependencies:
> > >
> > > Keep the following packages at their current version:
> > > fsl [Not Installed]
> > > fslview [Not Installed]
> > >
> > > Score is -9872
> > >
> > > Accept this solution? [Y/n/q/?]
> > > *
> > > Are there additional packages that I need to install first before
> > installing
> > > FSL ? If so could you kindly let me know what commands (package names) I
> > > have to use.
> > >
> > > Also I need the 64bit version of fsl. Am I using the correct package name
> > in
> > > 'sudo aptitude install fsl' ?
> > >
> > > My apologies if my questions are trivial. I am new to linux repositories
> > and
> > > am not sure whats happening.*
> > >
> > > *Thanks again,
> > > Jayanth*
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > >
> > > On Tue, Mar 31, 2009 at 5:16 PM, Michael Hanke <[log in to unmask]>
> > > wrote:
> > > > Hi,
> > > >
> > > > On Tue, Mar 31, 2009 at 04:59:19PM +0000, Jayanth Kolar wrote:
> > > >> Hi Matt,
> > > >>
> > > >> Thanks for the quick reply ! When i try to install
> > > >> "fsl_4.1.2.2~intrepid.apsy1_amd64.deb" using the GDebi Package
> > > >> Installer I am  getting the following error
> > > >>
> > > >> Error: Dependency is not satisfiable:
> > > libgdchart-gd2-noxpm|libgdcahrt-gd2-xpm
> > > >>
> > > >> I am newbie to linux package installations. Could you kindly let me
> > > >> know whats  going wrong?
> > > >
> > > > It looks like you have downloaded the package (.deb) manually. I'm not
> > > > familiar with this Gdebi tool. Please take a look at this page:
> > > >
> > > >  http://apsy.gse.uni-magdeburg.de/debian/html/
> > > >
> > > > Does that make sense?
> > > >
> > > > Michael
> > > >
> > > >
> > > > --
> > > > GPG key:  1024D/3144BE0F Michael Hanke
> > > > http://apsy.gse.uni-magdeburg.de/hanke
> > > > ICQ: 48230050
> > > >
> > >
> > >
> > >
> > > --
> > > Jayanth Kolar
> > > Graduate Research Assistant
> > > Physiological Imaging and Modeling Lab
> > > University of Illinois at Chicago
> > > Chicago IL - 60607
> > > 1-408-398-0097
> >
> > --
> > GPG key:  1024D/3144BE0F Michael Hanke
> > http://apsy.gse.uni-magdeburg.de/hanke
> > ICQ: 48230050
> >
> 
> 
> 
> -- 
> Jayanth Kolar
> Graduate Research Assistant
> Physiological Imaging and Modeling Lab
> University of Illinois at Chicago
> Chicago IL - 60607
> 1-408-398-0097



-- 
GPG key:  1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050

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