Hi - please see the FSL install instructions - you don't have FSLDIR
set.
Cheers.
On 27 Mar 2009, at 04:21, Enzo Tagliazucchi wrote:
> Hi all,
>
> I'm using FSL in Kubuntu Edgy. I've followed the installation
> procedure
> outlined in FSL page, and everything seems to work fine. But when I
> try to
> use fslchfiletype to convert from NIFTI to ANALYZE the following
> occurs:
>
> enzo@enzo-desktop:/bin$ fslchfiletype ANALYZE
> /home/enzo/Desktop/filtered_func_data_standard.nii.gz
>
>
> /usr/lib/fsl/fslchfiletype: 82: /bin/remove_ext: not found
> /usr/lib/fsl/fslchfiletype: 90: /bin/tmpnam: not found
> /usr/lib/fsl/fslchfiletype: 93: /bin/fslchfiletype_exe: not found
> /usr/lib/fsl/fslchfiletype: 105: /bin/imtest: not found
> [: 105: 1: unexpected operator
>
>
> Now, the problem seems to be the place where fslchfiletype searchs its
> stuff. All those apps are installed in /usr/lib/fsl (as locate
> reveals).
> Does anybody know how could I solve this issue?
>
> thanks!!
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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