Hi,
You can see colourbars in $FSLDIR/etc/luts/*.gif
You need to get the images into the same space - see the TBSS, FLIRT
and possible FEAT manual pages on this.
http://www.fmrib.ox.ac.uk/fsl/fsl/list.html
Cheers.
On 9 Mar 2009, at 14:39, Elisabeth Jonckers wrote:
> Dear fsl users and experts,
>
> I have done a two-sample t-test with the command line proposed in
> the manual.
>
> randomise -i TwoSamp4D -o TwoSampT -d dasign.mat -t design.con -m
> mast-T
>
> Is it possible to have a colorbar with the output files? and Can I
> know the
> p-value of the maximum voxels?
>
> I also want to overlay an anatomical image or template on the stat map
> because it's much clearer to present. Is there a possibility to
> change the
> dimensions of the mpas or templates because I always get errors when
> I want
> to do this.
>
> Probably these are rather basic questions, my excuses for that, I
> tried to
> find the answers in the list but it didn't really worked out.
> Thank you very much for helping me,
>
> Elisabeth Jonckers
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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