Hi Joe,
check chainID and segID; there might be a break in one of them not noticed
by phenix because it uses the other one, but then leading to an apparent
backbone break in coot because it uses the other one ...
Best
Clemens
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of
Joe Xtal
Sent: Monday, March 02, 2009 5:08 PM
To: [log in to unmask]
Subject: [ccp4bb] Broken chain in Pymol display
Hi all,
I tried to display a refined structure (final steps in phenix.refine) in
Pymol, but several places are not connected. BTW, the structure displays
normally in Coot and bond angle and length deviation are below 1.0 and
0.006, respectively.
Thank you,
Joe
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