Hello Steven, Artur and Hakan
As I had the same problem I have to tell that the problem didn't arise
from MRIconvert, but from SPM. MRIconvert outputs correct files. Then
there is a setting at the spm_defaults.m:
defaults.analyze.flip = 1; % <<= Very important. Relates to L/R
If you leave this to "1" SPM will flip the images again and all your
results are inverted. I had to set it to "0" and run the analysis
again to obtain correct results.
Regards.
Dorian
2009/2/26 Hakan Kutucu <[log in to unmask]>:
> Hi,
>
> Artur is absolutely right. Left and right sides are changed by MRIConverter.
> I used it and my calculations are wrong now.
>
>
> ----- Original Message ----- From: "Artur Pilacinski"
> <[log in to unmask]>
> To: <[log in to unmask]>
> Sent: Wednesday, February 25, 2009 2:43 PM
> Subject: Re: [SPM] How to Use MRIConverter 2.0 to Convert multiple volumes
> fMRI DICOM files to SPM Analyze images: still no solution
>
>
> Hi,
>
> And why don't you use the SPM built-in converter?
>
>
> If you use MRI Converter 2.0, be aware that it causes a few more problems
> with converting images from GE Signa scanners (one of them is swapping of L
> & R sides of image, depending on sequence properties). I also attempted to
> use this software (seemed quite usable at first glance), but it turned out
> to
> cause too much of trouble.
>
>
> Best,
>
> Artur
>
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