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FSL  February 2009

FSL February 2009

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Subject:

Re: problem with TBSS/tbss_3_postreg

From:

Steve Smith <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Wed, 25 Feb 2009 09:03:19 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (524 lines)

Hi - if you have just upgraded then I suggest starting from scratch.  
It sounds like your registration never completed. for some reason.
Cheers.



On 25 Feb 2009, at 06:45, Hanne Antila wrote:

> Hi,
>
> I thought about that and updated to the newest version. Unfortunately
> this didn'n help and the problem remains the same. So I guess the
> registration is then the issue here and now when I think about it, the
> registration did finish really fast. It isn't the data anyway, since I
> already tried with different dataset.
>
> The FA file contains these kinds of files
>
> Best.mfs
> Subject_FA.nii.gz
> Subject_FA_mask.nii.gz
> subject_FA_to_target_warp.mfs
> target.nii.gz
>
> Those subject_FA_to_target_warp.mfs -files are size 0 bites and empty
> when viewed in gedit. Does someone has any pointers? All help will be
> appreciated!
>
> Hanne Antila
> [log in to unmask]
> 0500-563674
>
> ----- Original Message -----
> From: Steve Smith <[log in to unmask]>
> Date: Tuesday, February 24, 2009 10:36 pm
> Subject: Re: [FSL] problem with TBSS/tbss_3_postreg
> To: [log in to unmask]
>
>> HI - are you maybe mixing up FSL versions? *_FAi images are from
>> the
>> old version. Either that or the registrations didn't complete
>> correctly.Cheers.
>>
>> On 24 Feb 2009, at 12:53, Hanne Antila wrote:
>>
>>> Hi,
>>>
>>> I'm a rookie in TBSS and I have run it successfully twice.
>> However,
>>> now I
>>> ran into some problems.
>>>
>>> I first ran tbss_1_preproc *.nii.gz and tbss_2_reg -T as
>> recommended
>>> and
>>> everything seemed ok, no error messages.
>>>
>>> The problems emerged, when I ran tbss_3_postreg -S. The error
>>> messages are
>>> below. Has someone had similar problems? My data consists of 30
>> FA-
>>> images.
>>>
>>> hanne@gyrus:~/DTI_Irina/TBBS$ tbss_3_postreg -S
>>> using pre-chosen target for registration
>>> transforming all FA images into MNI152 space
>>> dti_FA_C01_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C01_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C01_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C01_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C01_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C01_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C02_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C02_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C02_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C02_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C02_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C02_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C03_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C03_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C03_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C03_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C03_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C03_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C04_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C04_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C04_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C04_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C04_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C04_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C06_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C06_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C06_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C06_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C06_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C06_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C07_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C07_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C07_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C07_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C07_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C07_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C09_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C09_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C09_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C09_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C09_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C09_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C10_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C10_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C10_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C10_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C10_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C10_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C12_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C12_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C12_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C12_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C12_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C12_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C13_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C13_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C13_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C13_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C13_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C13_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C14_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C14_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C14_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C14_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C14_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C14_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C15_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C15_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C15_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C15_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C15_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C15_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C16_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C16_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C16_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C16_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C16_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C16_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C17_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C17_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C17_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C17_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C17_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C17_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_C18_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_C18_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_C18_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_C18_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_C18_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_C18_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P01_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P01_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P01_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P01_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P01_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P01_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P02_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P02_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P02_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P02_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P02_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P02_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P03_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P03_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P03_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P03_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P03_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P03_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P04_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P04_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P04_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P04_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P04_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P04_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P05_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P05_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P05_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P05_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P05_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P05_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P06_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P06_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P06_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P06_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P06_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P06_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P07_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P07_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P07_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P07_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P07_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P07_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P08_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P08_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P08_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P08_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P08_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P08_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P10_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P10_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P10_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P10_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P10_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P10_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P11_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P11_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P11_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P11_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P11_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P11_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P12_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P12_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P12_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P12_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P12_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P12_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P13_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P13_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P13_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P13_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P13_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P13_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P14_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P14_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P14_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P14_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P14_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P14_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P15_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P15_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P15_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P15_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P15_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P15_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> dti_FA_P16_FAi
>>> ** ERROR (nifti_image_read): failed to find header file for
>>> 'dti_FA_P16_FAi_to_target_nonlinear'
>>> ** ERROR: nifti_image_open(dti_FA_P16_FAi_to_target_nonlinear):
>> bad
>>> header info
>>> Error: failed to open file dti_FA_P16_FAi_to_target_nonlinear
>>> ERROR: Could not open image dti_FA_P16_FAi_to_target_nonlinear
>>> Image Exception : #22 :: Failed to read volume
>>> dti_FA_P16_FAi_to_target_nonlinear
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> merging all upsampled FA images into single 4D image
>>>
>>> Usage: fslmerge <-x/y/z/t/a> <output> <file1 file2 .......>
>>>    -t : concatenate images in time
>>>    -x : concatenate images in the x direction
>>>    -y : concatenate images in the y direction
>>>    -z : concatenate images in the z direction
>>>    -a : auto-choose: single slices -> volume, volumes -> 4D
>> (time
>>> series)
>>> ** ERROR (nifti_image_read): failed to find header file for 'all_FA'
>>> ** ERROR: nifti_image_open(all_FA): bad header info
>>> Error: failed to open file all_FA
>>> Error:: FslCloneHeader: Null pointer passed for FSLIO
>>> creating valid mask and mean FA
>>> ** ERROR (nifti_image_read): failed to find header file for 'all_FA'
>>> ** ERROR: nifti_image_open(all_FA): bad header info
>>> Error: failed to open file all_FA
>>> Cannot open volume all_FA for reading!
>>> ** ERROR (nifti_image_read): failed to find header file for 'all_FA'
>>> ** ERROR: nifti_image_open(all_FA): bad header info
>>> Error: failed to open file all_FA
>>> Cannot open volume all_FA for reading!
>>> ** ERROR (nifti_image_read): failed to find header file for 'all_FA'
>>> ** ERROR: nifti_image_open(all_FA): bad header info
>>> Error: failed to open file all_FA
>>> Cannot open volume all_FA for reading!
>>> skeletonising mean FA
>>> ** ERROR (nifti_image_read): failed to find header file for
>> 'mean_FA'> ** ERROR: nifti_image_open(mean_FA): bad header info
>>> Error: failed to open file mean_FA
>>> ERROR: Could not open image mean_FA
>>> Image Exception : #22 :: Failed to read volume mean_FA
>>> terminate called after throwing an instance of
>>> 'RBD_COMMON::BaseException'
>>> Aborted
>>> now view mean_FA_skeleton to check whether the default threshold
>> of
>>> 2000
>>> needs changing, when running:
>>> tbss_4_prestats [threshold]
>>> hanne@gyrus:~/DTI_Irina/TBBS$
>>>
>>
>>
>> --------------------------------------------------------------------
>> -------
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director,  Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
>> +44 (0) 1865 222726  (fax 222717)
>> [log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
>> --------------------------------------------------------------------
>> -------
>>
>


---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)
[log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
---------------------------------------------------------------------------

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