Hi again,
I decided to use FLIRT to register them to each other. Thanks.
Hi,
thank you for your answer. But I still don't understand how I can
co-register the two structural images to each other and then use this
aligned (combined) image for further analysis in FEAT?
Thanks so much
Hi,
I would not use SIENA for this, I would just use the functionality in FEAT,
which allows you to use the structurals as part of the registration process.
Cheers.
On 9 Feb 2009, at 22:44, SUBSCRIBE FSL Kim wrote:
> Hi everybody,
>
> I have a very basic question: I am examining test-retest reliability,
> so I thought I register two structural images from the same subject
> tested on two different days, and then use this aligned structural
> image to register the functional runs to. Correct? I ran Sienna, but
> can't figure out which output file to use for further analysis in
> FEAT. What am I missing? Any ideas and suggestions are greatly
> appreciated.
>
> Thanks
>
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Stephen M. Smith, Professor of Biomedical Engineering Associate Director,
Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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