Hi,
On Wed, Feb 11, 2009 at 04:52:08PM +0000, Silviu Podariu wrote:
> Hello,
>
> I downloaded the feeds archive (v.4.1.2) and I tried to run it on my Ubuntu
> 8.04 distribution, with the latest FSL version (as of today), and it fails
> badly (something is not in order from start, looks like some files/images
> are not even written).
>
> I wonder if anybody has had similar problems (see below what the
> report/error messages look like). I saw on the FSL-Ubuntu site a link about
> potential problems related to the default shell being 'dash' on Ubuntu
> systems (the link no longer works). Anyway, for some other reason I had
> changed it to 'bash' on this computer. I wonder if this would be a problem...
Can you please provide some more information? Are you using the DEB
package? If so, which version? You might also want to consider the
'fsl-selftest' command in the 'fsl-feeds' package.
Did you source the config file?
Michael
> ------------------- error(s) displayed: --------------------
> FSL Evaluation and Example Data Suite v4.1.2
>
> start time = Wed Feb 11 10:26:47 CST 2009
> hostname = dmadmin-laptop
> os = Linux dmadmin-laptop 2.6.24-21-generic #1 SMP Tue Oct 21 23:43:45 UTC
> 2008 i686 GNU/Linux
>
>
> /bin/rm -rf /home/dmadmin/fsl/feeds/results ; mkdir
> /home/dmadmin/fsl/feeds/results
>
>
> Starting PRELUDE & FUGUE at Wed Feb 11 10:26:47 CST 2009
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
>
> Starting SUSAN at Wed Feb 11 10:26:47 CST 2009
> No output image created
> Warning - test failed!
>
> Starting SIENAX (including testing BET and FLIRT and FAST) at Wed Feb 11
> 10:26:48 CST 2009
> checking error on BET:
> No output image created
> Warning - test failed!
> checking error on FLIRT:
> No output image created
> Warning - test failed!
> checking error on FAST:
> checking error on single-image binary segmentation:
> No output image created
> Warning - test failed!
> checking error on partial volume images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on SIENAX volume outputs:
> % error = 42.5
> Warning - test failed!
> % error = 2.65
> Warning - test failed!
> % error = 53.06
> Warning - test failed!
> % error = 42.64
> Warning - test failed!
> % error = 95.71
> Warning - test failed!
>
> Starting BET2 at Wed Feb 11 10:26:49 CST 2009
> checking error on T1 brain extraction:
> No output image created
> Warning - test failed!
> checking error on skull and scalp surfaces:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
>
> Starting FEAT at Wed Feb 11 10:26:50 CST 2009
> checking error on filtered functional data:
> No output image created
> Warning - test failed!
> checking error on raw Z stat images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on thresholded Z stat images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on registration images:
> No output image created
> Warning - test failed!
> No output image created
> Warning - test failed!
> checking error on position of largest cluster of Talairached zfstat1:
> couldn't open
> "/home/dmadmin/fsl/feeds/results/fmri.feat/cluster_zfstat1_std.txt": no such
> file or directory
> while executing
> "open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
> invoked from within
> "if { $feeds(feat) } {
>
> puts "\nStarting FEAT at [ exec date ]"
>
> # fix FEAT setup file to use FEEDSDIR and FSLDIR
> fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
> (file "./RUN" line 285)
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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