Hi all,
hopefully reaches some devs who can help me.
I try to build shared libs for ccp4 using the configure command
./configure \
--onlylibs \
--with-shared-libs \
--with-fftw=/usr \
--with-warnings \
--disable-cctbx \
--tmpdir="${TMPDIR}" \
linux
This should build the libs as shared libs and not statically linked. Am
I right?
But what I see is following
$ ldd libccp4c.so
statically linked
$ ldd libccp4f.so
statically linked
...
Am I doing something wrong or is this a build system problem? I attach
the full build.log
Thanks,
justin
--
Justin Lecher
Institute for Neuroscience and Biophysics
INB 2 - Molecular Biophysics II
Research centre Juelich GmbH,
52425 Juelich,Germany
phone: +49 2461 61 5385
[32;01m*[0m You need one of these Fortran Compilers: g77 gfortran ifc
[32;01m*[0m Installed are: gfortran ifort
>>> Unpacking source...
>>> Unpacking ccp4-6.1.1-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work
[32;01m*[0m Applying upstream patches ...
[32;01m*[0m Done.
[32;01m*[0m Applying Gentoo patches ...
[32;01m*[0m 6.1.1-dont-make-dirs-in-configure.patch ...
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m pass-clipper-enablevals.patch ...
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m 6.0.2-ppc-double-define-gerror.patch ...
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m 6.1.1-clipper-mmdbold-ggc-4.3.patch ...
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Done.
[32;01m*[0m Using GNU config files from /usr/share/libtool
[32;01m*[0m Updating lib/ssm/config.sub
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Updating lib/ccif/config.sub
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Updating lib/fftw/config.sub
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[32;01m*[0m Updating lib/rxdispencer/config.sub
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[32;01m*[0m Updating lib/DiffractionImage/config.sub
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Updating lib/clipper/config.sub
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[32;01m*[0m Updating src/pisa/config.sub
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[32;01m*[0m Updating src/rapper/gc7.0/libatomic_ops-1.2/config.sub
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[32;01m*[0m Updating src/rapper/gc7.0/config.sub
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[32;01m*[0m Updating x-windows/Mosflm/config.sub
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[32;01m*[0m Updating x-windows/Rotgen/config.sub
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[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Updating lib/ssm/config.guess
[A[191C [34;01m[ [32;01mok[34;01m ][0m
[32;01m*[0m Updating lib/ccif/config.guess
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[32;01m*[0m Updating lib/fftw/config.guess
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[32;01m*[0m Updating lib/rxdispencer/config.guess
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[32;01m*[0m Updating lib/DiffractionImage/config.guess
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[32;01m*[0m Updating x-windows/Mosflm/cbf/config.guess
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[32;01m*[0m Updating x-windows/Mosflm/config.guess
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[32;01m*[0m Updating x-windows/Rotgen/config.guess
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[32;01m*[0m Updating x-windows/xdl_view/src/config.guess
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[32;01m*[0m Updating x-windows/libjwc/libjwc_c/config.guess
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[32;01m*[0m Updating x-windows/libjwc/libjwc_f/config.guess
[A[191C [34;01m[ [32;01mok[34;01m ][0m
>>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work
>>> Compiling source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 ...
with_fftw='/usr'
srcdir bindir libdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
OK, setting up for a system type of `linux'...
! onlylibs build requested
!
! Only the libraries will be configured and built.
! Configuration of x-windows programs, phaser and mapslicer
! command library have been implicitly disabled.
! (Some messages below regarding re-enabling these options
! are likely to be misleading.)
! Using gnu fortran compiler. If you have an old fortran compiler, you may be better
! off using f2c, see --with-f2c option.
! The x-windows programs will not be installed.
! If you want the x-windows programs to be installed re-run
! configure with the --enable-x flag.
The CCIF library will be built and installed.
This has been tested on the most common systems, but if
you have problems, use the --disable-ccif flag.
Installation of the CCTBX library has been suppressed.
Some functionality will be lost.
Installation of Phaser has been suppressed.
The LAPACK linear algebra package will be included in the installation.
Configure will search for existing LAPACK and BLAS libraries on
on your system - if a version of LAPACK is not found then the NetLib
version will be built for you automatically.
If you want NetLib LAPACK and BLAS to be used regardless of
system libraries then rerun configure using --with-netlib-lapack
To disable inclusion of LAPACK, use the --disable-lapack flag
(This is not recommended as some programs will fail to build)
Building of the CCP4i MapSlicer command library has been suppressed.
As a result you will not be able to use the MapSlicer viewer.
! You have specified a non-default Fortran compiler (gfortran).
This probably only makes sense if you have made the appropriate
changes to the Fortran-C interface routines.
testing linux ABI using: x86_64-pc-linux-gnu-gcc
$ 64-bit
Testing Fortran90 support.
Fortran90 support confirmed (needed for latest Refmac and Molrep)
checking for ctime...
yes
Testing command for running m4 (m4 -D_gfort=1) ... ok
Running separate configure for CCIF library.
Updating modification times for configuration files
Please wait...
...done.
loading cache /tmp/28614.cache_file
CCCCCC CCCCCC IIII FFFFFFFFFF
CCCCCCCCCC CCCCCCCCCC IIII FFFFFFFFFF
CC C CC C II FF
CC CC II FF
CC CC II FFFFF
CC CC II FFFFF
CC CC II FF
CC C CC C II FF
CCCCCCCCCC CCCCCCCCC IIII FF
CCCCCC CCCCC IIII FF
=======================================================
Fortran programmers' tools for mmCIF
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler (x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC ) works... yes
checking whether the C compiler (x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC ) is a cross-compiler... no
checking whether we are using GNU C... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for ranlib... ranlib
checking for mawk... no
checking for gawk... gawk
checking for nm... /usr/bin/nm
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for signal.h... yes
checking for time.h... yes
checking for standards.h... no
checking for assert.h... yes
checking for unistd.h... checking for unistd.h... yes
yes
checking for working const... yes
checking whether we are using intel C and therefore restrict... no
checking whether we are using intel C 700 and require __GNUC__... no
-------------------------------------------------
Setting up system-dependent stuff
-------------------------------------------------
checking for standards.h... (cached) no
checking for working non-fixed mmap... yes
-------------------------------------------------
Regular expression package stuff
-------------------------------------------------
checking for regex.h... yes
checking out regular expression package... ok
-------------------------------------------------
*** Configuring CCIF build for shared library ***
-------------------------------------------------
-------------------------------------------------
Checking for certain archaic features
-------------------------------------------------
checking whether we need to define strerror... no
checking for old-style realloc... no
checking for old BSD sprintf... no
updating cache /tmp/28614.cache_file
creating ./config.status
creating shlib.csh
creating shlib.sh
creating Makefile
Returning to main configure.
********* BLAS AND LAPACK CONFIGURATION ***********
Warning: this option has not been extensively tested!
Please report problems to [log in to unmask]
Guessing names for native/vendor LAPACK and/or BLAS libraries
on this system
Possible LAPACK library names for this system:
liblapack
Searching for libraries with LAPACK and BLAS:
...found LAPACK library: /usr/lib64/liblapack.a
Testing: try to link library against test program
gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o testlink testlink.f -L/usr/lib64 -llapack
Link ok - using liblapack from /usr/lib64
* Checking whether we need a separate BLAS library *
Testing: try linking library against test program
gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o testlsame lsametst.f -L/usr/lib64 -llapack
Test program okay - additional separate BLAS not required
Test C linking for lapack library
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -o testlink testlink.c -L/usr/lib64 -llapack
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/temp/cc3D2jM3.o: In function `main':
testlink.c:(.text+0x84): undefined reference to `dsyev'
collect2: ld returned 1 exit status
Linking in LAPACK/BLAS using XLAPACK_LIB="-L/usr/lib64 -llapack"
***** BLAS AND LAPACK CONFIGURATION FINISHED *******
********* CLIPPER CONFIGURATION ***********
Updating modification times for configuration files
Please wait...
...done.
configure --enable-shared=yes --with-fftw=/usr FFTW_LIBS="-L/usr/lib -lsrfftw -lsfftw" FFTW_CXXFLAGS="-I/usr/include" --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --with-ccp4=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --enable-mmdb --enable-cif --enable-ccp4 --enable-minimol --enable-mmdbold --enable-mtz --with-mccp4=/usr --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for egrep... grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... (cached) none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) gcc3
checking for ANSI C header files... (cached) yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for sqrt in -lm... yes
checking for CMMDBManager in MMDB... no
configure: WARNING: assuming library -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src
checking for ccp4_errno in CCP4... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lccp4c headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking whether time.h and sys/time.h may both be included... yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking for struct utimbuf... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating clipper/Makefile
config.status: creating clipper/cctbx/Makefile
config.status: creating clipper/ccp4/Makefile
config.status: creating clipper/contrib/Makefile
config.status: creating clipper/core/Makefile
config.status: creating clipper/mmdb/Makefile
config.status: creating clipper/mmdbold/Makefile
config.status: creating clipper/minimol/Makefile
config.status: creating clipper/phs/Makefile
config.status: creating clipper/cif/Makefile
config.status: creating clipper/cns/Makefile
config.status: creating clipper/fortran/Makefile
config.status: creating examples/Makefile
config.status: creating clipper-config
config.status: creating macros/Makefile
config.status: creating dox/Makefile
config.status: creating config.h
config.status: executing depfiles commands
Configuration Summary
------------------------------
core: yes
contrib: yes
phs: yes
cns: yes
mmdb: yes
mmdbold: yes
minimol: yes
cif: yes
ccp4: yes
cctbx: no
fortran: no
***** CLIPPER CONFIGURATION FINISHED *******
********* DIFFRACTION IMAGE LIBRARY CONFIGURATION ***********
Updating modification times for configuration files
Please wait...
...done.
configure --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --with-tcl-module --with-pic
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
checking for gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) gcc3
checking whether make sets $(MAKE)... (cached) yes
checking for ANSI C header files... (cached) yes
checking for python... python
checking /usr/include/python2.5/Python.h usability... yes
checking /usr/include/python2.5/Python.h presence... yes
checking for /usr/include/python2.5/Python.h... yes
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h usability... yes
checking /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h presence... yes
checking for /home/justin/.gentoo/java-config-2/current-user-vm/include/jni.h... yes
checking for sqrt in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating CBFlib/Makefile
config.status: creating CBFlib/src/Makefile
config.status: creating MAR/Makefile
config.status: creating Rigaku/Makefile
config.status: creating Bruker/Makefile
config.status: creating jpg/Makefile
config.status: executing depfiles commands
***** DIFFRACTION IMAGE LIBRARY CONFIGURATION FINISHED *******
********* SSM CONFIGURATION ***********
Updating modification times for configuration files
Please wait...
...done.
configure --enable-shared=yes --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for style of include used by make... GNU
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-g++... (cached) gcc3
checking for ANSI C header files... (cached) yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for CMMDBManager in MMDB... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for sqrt in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
***** SSM CONFIGURATION FINISHED *******
********* RAPPER CONFIGURATION ***********
Updating modification times for configuration files
Please wait...
...done.
configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --disable-shared
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking for gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking bstring.h usability... no
checking bstring.h presence... no
checking for bstring.h... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking for file... /usr/bin/file
checking if x86_64-pc-linux-gnu-gcc static flag works... yes
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... no
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking dynamic linker characteristics... GNU/Linux ld.so
configure: creating ./config.status
config.status: creating Makefile
config.status: WARNING: Makefile.in seems to ignore the --datarootdir setting
config.status: creating LOOP/Makefile
config.status: WARNING: LOOP/Makefile.in seems to ignore the --datarootdir setting
config.status: creating data/Makefile
config.status: WARNING: data/Makefile.in seems to ignore the --datarootdir setting
config.status: executing depfiles commands
=== configuring in gc7.0 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/gc7.0)
configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking GC version numbers... major=7 minor=0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for style of include used by make... GNU
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking for ar... ar
checking for ranlib... ranlib
checking for a BSD-compatible install... /usr/bin/install -c
checking for thread model used by GCC... posix
configure: WARNING: "Explict GC_INIT() calls may be required."
checking for xlc... no
checking for dlopen in -ldl... yes
checking whether to build shared libraries... yes
checking which machine-dependent code should be used...
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... (cached) ar
checking for ranlib... (cached) ranlib
checking for strip... strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking sys/dg_sys_info.h usability... no
checking sys/dg_sys_info.h presence... no
checking for sys/dg_sys_info.h... no
checking whether Solaris gcc optimization fix is necessary... no
checking atomic_ops.h usability... no
checking atomic_ops.h presence... no
checking for atomic_ops.h... no
configure: Using internal version of libatomic_ops
configure: creating ./config.status
config.status: creating Makefile
config.status: creating bdw-gc.pc
config.status: executing depfiles commands
config.status: executing default commands
=== configuring in libatomic_ops (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/gc7.0/libatomic_ops)
configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for ranlib... ranlib
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
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checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking for ANSI C header files... (cached) yes
checking Determining PIC compiler flag... -fPIC
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/atomic_ops/Makefile
config.status: creating src/atomic_ops/sysdeps/Makefile
config.status: creating doc/Makefile
config.status: creating tests/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing default commands
=== configuring in libxml2 (/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/src/rapper/libxml2)
configure: running /bin/sh ./configure '--prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--enable-shared=yes' '--exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1' '--bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin' '--libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' '--disable-shared' 'CXX=x86_64-pc-linux-gnu-g++' 'CXXFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fPIC' 'CC=x86_64-pc-linux-gnu-gcc' 'CFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC' 'F77=gfortran' 'FFLAGS=-O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for rm... /bin/rm
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checking for perl... /usr/bin/perl
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checking for egrep... grep -E
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checking for string.h... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
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checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
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checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
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checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
Checking zlib
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzread in -lz... yes
Checking headers
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
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Checking libraries
checking for strftime... yes
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checking for library containing gethostent... none required
checking for library containing setsockopt... none required
checking for library containing connect... none required
checking for type of socket length (socklen_t)... socklen_t *
checking whether to enable IPv6... yes
checking struct sockaddr::ss_family... yes
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checking for isinf... yes
checking for python... /usr/bin/python
Found Python version 2.5
checking for shl_load... no
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Checking configuration requirements
Enabling multithreaded support
checking pthread.h usability... yes
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Enabled Schematron support
Enabled Schemas/Relax-NG support
configure: creating ./config.status
config.status: creating libxml2.spec
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/libxml/Makefile
config.status: creating doc/Makefile
config.status: creating doc/examples/Makefile
config.status: creating doc/devhelp/Makefile
config.status: creating example/Makefile
config.status: creating python/Makefile
config.status: creating python/tests/Makefile
config.status: creating xstc/Makefile
config.status: creating include/libxml/xmlversion.h
config.status: creating xml2-config
config.status: creating libxml-2.0.pc
config.status: creating libxml-2.0-uninstalled.pc
config.status: creating python/setup.py
config.status: creating config.h
config.status: executing depfiles commands
Done configuring
***** RAPPER CONFIGURATION FINISHED *******
********* PISA CONFIGURATION ***********
Updating modification times for configuration files
Please wait...
...done.
configure --enable-shared=yes --exec_prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --with-mmdb=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --with-ssm=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for floor... yes
checking for pow... yes
checking for rint... yes
checking for sqrt... yes
checking for sqrt in -lm... yes
checking for CMMDBManager in MMDB... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb
checking for CSSMAlign in SSM... no
configure: WARNING: assuming library -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lssm headers -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pisastore/Makefile
config.status: creating molref/Makefile
config.status: creating sbase/Makefile
config.status: creating doc/Makefile
config.status: creating pisa.cfg
config.status: executing depfiles commands
***** PISA CONFIGURATION FINISHED *******
Building of the RCSB PDB_EXTRACT suite has been suppressed.
As a result you will not be able to use the PDB_EXTRACT programs.
The configuration can be re-built by executing config.status :
#!/bin/sh
# (Generated automatically by configure)
# CCP4 was configured as follows:
libdir="/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" RANLIB="ranlib" \
FC="gfortran" FOPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" \
COPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" XFFLAGS="-fno-second-underscore -fno-stack-protector -fPIC" \
XCFLAGS="-DGFORTRAN -DPROTOTYPE -fPIC" CC="x86_64-pc-linux-gnu-gcc" \
LNS="ln -s" M4="m4 -D_gfort=1" \
XCXXFLAGS=" -fPIC" CXX="x86_64-pc-linux-gnu-g++" \
CXXOPTIM="-O2 -march=core2 -pipe -fomit-frame-pointer" \
M4FLAGS="" SETFLAGS="refmac5_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' lgglib_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O0' arp_waters_FLAGS='-fno-second-underscore -fno-stack-protector -fPIC -O2 -march=core2 -pipe -fomit-frame-pointer' " \
MAKE="make" F="f" \
INSTALL_PROGRAM="cp -p" INSTALL_DATA="cp -p" \
XLDFLAGS="-Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm" \
SHARE_LIB="ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a" \
SHARED_LIB_CFLAGS="" \
SHARED_LIB_FFLAGS="" \
SHARE_INST="$(INSTALL_DATA) `pwd`/libmmdb.so $(libdir)/libmmdb.so; $(INSTALL_DATA) `pwd`/libccp4c.so $(libdir)/libccp4c.so; $(INSTALL_DATA) `pwd`/libccp4f.so $(libdir)/libccp4f.so; " \
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/configure --prefix=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1 --bindir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin --libdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib --onlylibs --with-shared-libs --tmpdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/temp --disable-x --disable-cctbx --disable-phaser --disable-mapslicer --enable-clipper --enable-ssm --disable-fftw --with-fftw=/usr --with-warnings --disable-pdb_extract linux64 -hush
make -j12 -l8 -j1 onlylib
if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lapack; \
make -l 8 ; else true; fi
if test -n "lib/ccif"; then cd lib/ccif; \
make -l 8 ; else true; fi; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o condition.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/condition.c && \
ar r libccif.a condition.o && true
ar: creating libccif.a
ranlib libccif.a
rm -f condition.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_map.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_map.c &&\
ar r libccif.a star_map.o && true
ranlib libccif.a
rm -f star_map.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o ccif_unix.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/ccif_unix.c && \
ar r libccif.a ccif_unix.o && true
ranlib libccif.a
rm -f ccif_unix.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sym.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c && \
ar r libccif.a sym.o && true
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_stat’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:488: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:510: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘size_t’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:510: warning: format ‘%d’ expects type ‘int’, but argument 5 has type ‘size_t’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_dump’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:722: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:722: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:723: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:723: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:730: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:731: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:732: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:733: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:734: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:735: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:762: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c: In function ‘zzs_undump’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:852: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:852: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:853: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:853: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:860: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:861: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:862: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:863: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:864: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:894: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sym.c:901: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
ranlib libccif.a
rm -f sym.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sorlist.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sorlist.c && \
ar r libccif.a sorlist.o && true
ranlib libccif.a
rm -f sorlist.o
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/scanf_ansi.c -o scanf_ansi
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_scan.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_scan.c -DPTR_FROM_TEXT=`/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/scanf_test` && \
ar r libccif.a star_scan.o && true
ranlib libccif.a
rm -f star_scan.o scanf_ansi
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_err.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_err.c && \
ar r libccif.a star_err.o && true
ranlib libccif.a
rm -f star_err.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o value_manip.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/value_manip.c && \
ar r libccif.a value_manip.o && true
ranlib libccif.a
rm -f value_manip.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o context.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/context.c && \
ar r libccif.a context.o && true
ranlib libccif.a
rm -f context.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o struct_manip.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/struct_manip.c && \
ar r libccif.a struct_manip.o && true
ranlib libccif.a
rm -f struct_manip.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o f_interface.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/f_interface.c && \
ar r libccif.a f_interface.o && true
ranlib libccif.a
rm -f f_interface.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_walk.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_walk.c && \
ar r libccif.a star_walk.o && true
ranlib libccif.a
rm -f star_walk.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_print.o -D_refvar_inits=star_print_refvar_inits /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_print.c && \
ar r libccif.a star_print.o && true
ranlib libccif.a
rm -f star_print.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o star_graph.o -D_refvar_inits=star_dot_refvar_inits /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/star_graph.c && \
ar r libccif.a star_graph.o && true
ranlib libccif.a
rm -f star_graph.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o lib_dict2tab.o -D_refvar_inits=_dict_refvar_inits \
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/lib_dict2tab.c && \
ar r libccif.a lib_dict2tab.o && true
ranlib libccif.a
rm -f lib_dict2tab.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o sort.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/sort.c && \
ar r libccif.a sort.o && true
ranlib libccif.a
rm -f sort.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o list.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/list.c && \
ar r libccif.a list.o && true
ranlib libccif.a
rm -f list.o
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -fPIC -o rb.o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c && \
ar r libccif.a rb.o && true
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c: In function ‘rb_print_tree’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:446: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:448: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:448: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:454: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:454: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:462: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c: In function ‘rb_iprint_tree’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:471: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 3 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 4 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:474: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:481: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 2 has type ‘Rb_node’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 5 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 6 has type ‘struct rb_node *’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/rb.c:489: warning: format ‘%x’ expects type ‘unsigned int’, but argument 7 has type ‘struct rb_node *’
ranlib libccif.a
rm -f rb.o
if ( test ! -f /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c ); then touch /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c; fi
if (test -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c -a -r /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c) ; \
then \
x86_64-pc-linux-gnu-gcc -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/strtod.c && ar r libccif.a strtod.o; \
ranlib libccif.a ; rm -f strtod.o; \
else \
touch libccif.a ; \
fi
if test -f /librx.a; then \
rm -rf rx.dir; mkdir rx.dir; \
echo 'rxdispencer routines being added to library'; \
cp /librx.a rx.dir; cd rx.dir; \
ar -x librx.a; cd ..; \
ar r libccif.a rx.dir/*.o; \
ranlib libccif.a; rm -rf rx.dir; \
fi
ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
x86_64-pc-linux-gnu-gcc -c -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif/cifdic_to_symtab.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -D_XOPEN_SOURCE_EXTENDED=1 -DHAVE_MMAP=1 -DHAVE_REGEX_H=1 -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -o cifdic_to_symtab cifdic_to_symtab.o -Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm -L`pwd` -lccif -lm
Building symbol table:
LD_LIBRARY_PATH=`pwd`:/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib ./cifdic_to_symtab /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/cif_mm.dic cif_mmdic.lib 199 > cif_mmdic.out
Loading dictionary....dictionary loaded.
Starting first tree walk....tree walk completed.
Starting second tree walk....tree walk completed.
Grouping items in their categories....done
Dumping symbol table....symbol table dumped.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
if test -f /librx.a; then \
rm -rf rx.dir; mkdir rx.dir; \
echo 'rxdispencer routines being added to library'; \
cp /librx.a rx.dir; cd rx.dir; \
ar -x librx.a; cd ..; \
ar r libccif.a rx.dir/*.o; \
ranlib libccif.a; rm -rf rx.dir; \
fi
ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/cif_mmdic.lib
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
if (test -f libccif.so); then \
cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.so; \
fi
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
cd lib/src; make -l 8 ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
test ! -x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit && x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -o /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit fsplit.c || true
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename bfgs_min.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_chain.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_manager.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_symop.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename file_.o .o`.cpp
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.cpp: In member function ‘word CFile::ReadLine(char*, word)’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.cpp:681: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_cifdefs.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_mask.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_title.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename linalg_.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_coormngr.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_mmcif.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_utils.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename machine_.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_cryst.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_model.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename stream_.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mattype_.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_file.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_rwbrook.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_atom.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_graph.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_selmngr.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_align.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename hybrid_36.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_tables.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename math_.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_sbase.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_sbase0.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_uddata.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_xml.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_bondmngr.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename mmdb_ficif.o .o`.cpp
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/`basename random_n.o .o`.cpp
ar r ./libmmdb.a bfgs_min.o mmdb_chain.o mmdb_manager.o mmdb_symop.o file_.o mmdb_cifdefs.o mmdb_mask.o mmdb_title.o linalg_.o mmdb_coormngr.o mmdb_mmcif.o mmdb_utils.o machine_.o mmdb_cryst.o mmdb_model.o stream_.o mattype_.o mmdb_file.o mmdb_rwbrook.o mmdb_atom.o mmdb_graph.o mmdb_selmngr.o mmdb_align.o hybrid_36.o mmdb_tables.o math_.o mmdb_sbase.o mmdb_sbase0.o mmdb_uddata.o mmdb_xml.o mmdb_bondmngr.o mmdb_ficif.o random_n.o
ar: creating ./libmmdb.a
ranlib libmmdb.a
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_err.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_file.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_utils.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_array.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_parser.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cvecmat.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_program.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_general.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_general.c: In function ‘ccperror’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_general.c:98: warning: passing argument 2 of ‘ccp4InvokeCallback’ discards qualifiers from pointer target type
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_unitcell.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmtzlib.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_accessor.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_close.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_data.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_header.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_labels.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_open.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_skew.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_stats.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmap_symop.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename csymlib.o .o`.c
ar r ./libccp4c.a library_err.o library_file.o library_utils.o ccp4_array.o ccp4_parser.o cvecmat.o ccp4_program.o ccp4_general.o ccp4_unitcell.o cmtzlib.o cmap_accessor.o cmap_close.o cmap_data.o cmap_header.o cmap_labels.o cmap_open.o cmap_skew.o cmap_stats.o cmap_symop.o csymlib.o
ar: creating ./libccp4c.a
ranlib libccp4c.a
rm -rf parser.dir; mkdir parser.dir
cd parser.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/parser.f && rm -f ZZZ*.f zzz*.f;
keynum.f
keyerr.f
gtnrea.f
gtnint.f
gtprea.f
gtpint.f
sblank.f
cmatch.f
chkkey.f
putlin.f
blank.f
lerror.f
rdsymm.f
rdhead.f
rdcell.f
rdreso.f
rdscal.f
rdresl.f
gttrea.f
gttint.f
rdatomselect.f
if test ! -f parser.dir/parser.f; then \
echo ' SUBROUTINE PRSER' > parser.dir/parser.f; \
echo ' END' >> parser.dir/parser.f; \
fi
cd parser.dir && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
ar: creating .././libccp4f.a
rm -f parser.dir/*.o
rm -rf fftlib.dir; mkdir fftlib.dir
echo ' SUBROUTINE FFTLIB' > fftlib.dir/fftlib.f
echo ' END' >> fftlib.dir/fftlib.f
cd fftlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fftlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done \
&& ar r .././libccp4f.a *.o
rm -f fftlib.dir/*.o
rm -rf lgglib.dir; mkdir lgglib.dir
echo ' SUBROUTINE LGGLIB' > lgglib.dir/lgglib.f
echo ' END' >> lgglib.dir/lgglib.f
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb1.f:29.72:
1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb2.f:31.72:
1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb3.f:31.72:
1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdbca.f:24.72:
1 , (X(I,NATM),I=1,3)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getpdb.f:23.72:
1 , (X(I,NATM),I=1,3)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/getrdi.f:25.72:
1 SEQ(NATM), RES(NATM), ATOM(NATM)
1
Warning: Branch at (1) causes an infinite loop
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:48.72:
if (jmove.eq.14) goto 40
1
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:69.72:
40 end do
2
Warning: Deleted feature: GOTO at (1) jumps to END of construct at (2)
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:66.72:
goto 40
1
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/lgglib.dir/packexpnd.f:69.72:
40 end do
2
Warning: Deleted feature: GOTO at (1) jumps to END of construct at (2)
rm -f lgglib.dir/*.o
rm -rf libhtml.dir; mkdir libhtml.dir
echo ' SUBROUTINE LIBHTML' > libhtml.dir/libhtml.f
echo ' END' >> libhtml.dir/libhtml.f
cd libhtml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/libhtml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f libhtml.dir/*.o
rm -rf modlib.dir; mkdir modlib.dir
echo ' SUBROUTINE MODLIB' > modlib.dir/modlib.f
echo ' END' >> modlib.dir/modlib.f
cd modlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/modlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f modlib.dir/*.o
rm -rf plotsubs.dir; mkdir plotsubs.dir
echo ' SUBROUTINE PLOTSUBS' > plotsubs.dir/plotsubs.f
echo ' END' >> plotsubs.dir/plotsubs.f
cd plotsubs.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/plotsubs.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f plotsubs.dir/*.o
rm -rf plot84lib.dir; mkdir plot84lib.dir
echo ' SUBROUTINE PLOT84LIB' > plot84lib.dir/plot84lib.f
echo ' END' >> plot84lib.dir/plot84lib.f
cd plot84lib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/plot84lib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f plot84lib.dir/*.o
rm -rf pxxml.dir; mkdir pxxml.dir
echo ' SUBROUTINE PXXML' > pxxml.dir/pxxml.f
echo ' END' >> pxxml.dir/pxxml.f
cd pxxml.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pxxml.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f pxxml.dir/*.o
rm -rf ccplib.dir; mkdir ccplib.dir
echo ' SUBROUTINE CCPLIB' > ccplib.dir/ccplib.f
echo ' END' >> ccplib.dir/ccplib.f
cd ccplib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccplib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f ccplib.dir/*.o
m4 -D_gfort=1 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/unix.m4 >unix.f
rm -rf unix.dir; mkdir unix.dir
echo ' SUBROUTINE UNIX' > unix.dir/unix.f
echo ' END' >> unix.dir/unix.f
cd unix.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit ../unix.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f unix.dir/*.o
rm -rf rwbrook.dir; mkdir rwbrook.dir
echo ' SUBROUTINE RWBROOK' > rwbrook.dir/rwbrook.f
echo ' END' >> rwbrook.dir/rwbrook.f
cd rwbrook.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/rwbrook.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f rwbrook.dir/*.o
rm -rf cciflib.dir; mkdir cciflib.dir
echo ' SUBROUTINE CCIFLIB' > cciflib.dir/cciflib.f
echo ' END' >> cciflib.dir/cciflib.f
cd cciflib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cciflib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
&& ar r .././libccp4f.a *.o
rm -f cciflib.dir/*.o
rm -rf harvlib.dir; mkdir harvlib.dir
echo ' SUBROUTINE HARVLIB' > harvlib.dir/harvlib.f
echo ' END' >> harvlib.dir/harvlib.f
if test -n "lib/ccif" ; then cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/harvlib.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
&& ar r .././libccp4f.a *.o ; else \
cd harvlib.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/harv_dummy.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src $i; done\
&& ar r .././libccp4f.a *.o ; fi
rm -f harvlib.dir/*.o
rm -rf keyparse.dir; mkdir keyparse.dir
echo ' SUBROUTINE KEYPARSE' > keyparse.dir/keyparse.f
echo ' END' >> keyparse.dir/keyparse.f
cd keyparse.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/keyparse.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f keyparse.dir/*.o
gfortran -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_f.f && ar r ./libccp4f.a pack_f.o \
&& rm pack_f.o
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c: In function ‘pack_chunk’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:852: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:860: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c: In function ‘v2pack_chunk’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:901: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/pack_c.c:910: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
ar r ./libccp4f.a pack_c.o && rm pack_c.o
rm -rf dna_output.dir; mkdir dna_output.dir
echo ' SUBROUTINE DNA_OUTPUT' > dna_output.dir/dna_output.f
echo ' END' >> dna_output.dir/dna_output.f
cd dna_output.dir && /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/fsplit /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/dna_output.f >/dev/null && rm -f ZZZ*.f zzz*.f && \
for i in `pwd`/*.f; do \
gfortran -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC $i; done\
&& ar r .././libccp4f.a *.o
rm -f dna_output.dir/*.o
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmtzlib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrhist_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:275: warning: passing argument 2 of ‘ccp4_lrhist’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyin_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:602: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyout_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:656: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lkyset_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:701: warning: passing argument 2 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:701: warning: passing argument 4 of ‘MtzParseLabin’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrassn_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:800: warning: passing argument 2 of ‘ccp4_lrassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:800: warning: passing argument 4 of ‘ccp4_lrassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lrreff_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1180: warning: passing argument 5 of ‘ccp4_lrreff’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwhist_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1777: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwhstl_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:1829: warning: passing argument 2 of ‘MtzAddHistory’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwassn_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2381: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2381: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c: In function ‘lwclab_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2459: warning: passing argument 2 of ‘ccp4_lwassn’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmtzlib_f.c:2459: warning: passing argument 4 of ‘ccp4_lwassn’ from incompatible pointer type
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename csymlib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘symtr3_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:341: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘symtr4_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:377: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c: In function ‘calc_orig_ps_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/csymlib_f.c:1684: warning: passing argument 3 of ‘ccp4spg_generate_origins’ from incompatible pointer type
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_parser_f.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename library_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c: In function ‘ltime_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c:799: warning: passing argument 1 of ‘localtime_r’ makes pointer from integer without a cast
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c: In function ‘gmtime_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/library_f.c:832: warning: passing argument 1 of ‘gmtime_r’ makes pointer from integer without a cast
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_diskio_f.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_general_f.o .o`.c
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename ccp4_unitcell_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orth_to_frac_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:86: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_frac_to_orth_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:105: warning: passing argument 1 of ‘ccp4uc_orth_to_frac’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_orthu_to_fracu_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:124: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c: In function ‘ccp4uc_f_fracu_to_orthu_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/ccp4_unitcell_f.c:143: warning: passing argument 1 of ‘ccp4uc_orthu_to_fracu’ from incompatible pointer type
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename cmaplib_f.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘ioArrayPrint’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:91: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:97: warning: passing argument 1 of ‘free’ discards qualifiers from pointer target type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘msywrt_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:1154: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c: In function ‘ccp4_map_write_symm_matrix_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/cmaplib_f.c:1181: warning: passing argument 3 of ‘mat4_to_symop’ from incompatible pointer type
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename binsortint.o .o`.c
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c: In function ‘srtbeg_’:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c:160: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/binsortint.c:161: warning: ignoring return value of ‘pipe’, declared with attribute warn_unused_result
x86_64-pc-linux-gnu-gcc -O2 -march=core2 -pipe -fomit-frame-pointer -DGFORTRAN -DPROTOTYPE -fPIC -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -c /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/`basename hybrid_36_f.o .o`.c
ar r ./libccp4f.a cmtzlib_f.o csymlib_f.o ccp4_parser_f.o library_f.o ccp4_diskio_f.o ccp4_general_f.o ccp4_unitcell_f.o cmaplib_f.o binsortint.o hybrid_36_f.o
ranlib libccp4f.a
ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; fi
cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_file_err.h
cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_program.h
cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_unitcell.h
cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_errno.h
cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_stats.h
cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/csymlib.h
cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_file.h
cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/w32mvs.h
cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_fortran.h
cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_spg.h
cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_utils.h
cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_header.h
cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib.h
cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cvecmat.h
cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/mtzdata.h
cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_array.h
cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_general.h
cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_sysdep.h
cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_vars.h
cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_labels.h
cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib_f.h
cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/overview.h
cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_errno.h
cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_parser.h
cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_types.h
cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_data.h
cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_skew.h
cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmtzlib.h
cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_f.h
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; fi
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/bfgs_min.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/bfgs_min.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/math_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/math_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_bondmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_bondmngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cryst.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cryst.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_graph.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_graph.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_model.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_model.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_symop.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_utils.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/file_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mattype_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mattype_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_chain.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_chain.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_defs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_defs.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_manager.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_manager.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_rwbrook.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_rwbrook.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_tables.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_tables.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_xml.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_xml.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/linalg_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/linalg_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_align.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_align.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cifdefs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cifdefs.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_ficif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_ficif.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mask.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mask.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_title.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_title.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/random_n.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/random_n.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/machine_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/machine_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_atom.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_atom.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_coormngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_coormngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_file.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mmcif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mmcif.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_selmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_selmngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_uddata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_uddata.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/stream_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/stream_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase0.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase0.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/hybrid_36.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/hybrid_36.h
cp -p `pwd`/./libmmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4f.so;
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
if test -n ""; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/fftw; \
make -i -l 8 install; else true; fi ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1'
for i in lib/clipper lib/DiffractionImage lib/ccif lib/src lib/ssm src lib/data unsupported/src x-windows share ; do (if test -f $i/Makefile; then \
if test $i = x-windows; then \
cd $i; make -i -wl 8 install; \
else cd $i; make -wl 8 install; fi; \
else true; fi) ; done
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
Making install in macros
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/macros'
Making install in clipper
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
Making install in phs
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
source='phs_io.cpp' object='phs_io.lo' libtool=yes \
depfile='.deps/phs_io.Plo' tmpdepfile='.deps/phs_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o phs_io.lo `test -f 'phs_io.cpp' || echo './'`phs_io.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c phs_io.cpp -MT phs_io.lo -MD -MP -MF .deps/phs_io.TPlo -fPIC -DPIC -o .libs/phs_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c phs_io.cpp -MT phs_io.lo -MD -MP -MF .deps/phs_io.TPlo -o phs_io.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-phs.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 phs_io.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/phs_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-phs.so.2 -o .libs/libclipper-phs.so.2.0.0
(cd .libs && rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2)
(cd .libs && rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so)
ar cru .libs/libclipper-phs.a phs_io.o
ranlib .libs/libclipper-phs.a
creating libclipper-phs.la
(cd .libs && rm -f libclipper-phs.la && ln -s ../libclipper-phs.la libclipper-phs.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-phs.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
/usr/bin/install -c .libs/libclipper-phs.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so; }; })
/usr/bin/install -c .libs/libclipper-phs.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
/usr/bin/install -c .libs/libclipper-phs.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
cp -p phs_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs/phs_io.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
Making install in contrib
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
source='convolution_search.cpp' object='convolution_search.lo' libtool=yes \
depfile='.deps/convolution_search.Plo' tmpdepfile='.deps/convolution_search.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o convolution_search.lo `test -f 'convolution_search.cpp' || echo './'`convolution_search.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c convolution_search.cpp -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.TPlo -fPIC -DPIC -o .libs/convolution_search.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c convolution_search.cpp -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.TPlo -o convolution_search.o >/dev/null 2>&1
source='sfcalc.cpp' object='sfcalc.lo' libtool=yes \
depfile='.deps/sfcalc.Plo' tmpdepfile='.deps/sfcalc.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfcalc.lo `test -f 'sfcalc.cpp' || echo './'`sfcalc.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc.cpp -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.TPlo -fPIC -DPIC -o .libs/sfcalc.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc.cpp -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.TPlo -o sfcalc.o >/dev/null 2>&1
source='edcalc.cpp' object='edcalc.lo' libtool=yes \
depfile='.deps/edcalc.Plo' tmpdepfile='.deps/edcalc.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o edcalc.lo `test -f 'edcalc.cpp' || echo './'`edcalc.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c edcalc.cpp -MT edcalc.lo -MD -MP -MF .deps/edcalc.TPlo -fPIC -DPIC -o .libs/edcalc.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c edcalc.cpp -MT edcalc.lo -MD -MP -MF .deps/edcalc.TPlo -o edcalc.o >/dev/null 2>&1
source='sfcalc_obs.cpp' object='sfcalc_obs.lo' libtool=yes \
depfile='.deps/sfcalc_obs.Plo' tmpdepfile='.deps/sfcalc_obs.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfcalc_obs.lo `test -f 'sfcalc_obs.cpp' || echo './'`sfcalc_obs.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc_obs.cpp -MT sfcalc_obs.lo -MD -MP -MF .deps/sfcalc_obs.TPlo -fPIC -DPIC -o .libs/sfcalc_obs.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfcalc_obs.cpp -MT sfcalc_obs.lo -MD -MP -MF .deps/sfcalc_obs.TPlo -o sfcalc_obs.o >/dev/null 2>&1
source='fffear.cpp' object='fffear.lo' libtool=yes \
depfile='.deps/fffear.Plo' tmpdepfile='.deps/fffear.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fffear.lo `test -f 'fffear.cpp' || echo './'`fffear.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fffear.cpp -MT fffear.lo -MD -MP -MF .deps/fffear.TPlo -fPIC -DPIC -o .libs/fffear.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fffear.cpp -MT fffear.lo -MD -MP -MF .deps/fffear.TPlo -o fffear.o >/dev/null 2>&1
source='sfscale.cpp' object='sfscale.lo' libtool=yes \
depfile='.deps/sfscale.Plo' tmpdepfile='.deps/sfscale.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfscale.lo `test -f 'sfscale.cpp' || echo './'`sfscale.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfscale.cpp -MT sfscale.lo -MD -MP -MF .deps/sfscale.TPlo -fPIC -DPIC -o .libs/sfscale.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfscale.cpp -MT sfscale.lo -MD -MP -MF .deps/sfscale.TPlo -o sfscale.o >/dev/null 2>&1
source='function_object_bases.cpp' object='function_object_bases.lo' libtool=yes \
depfile='.deps/function_object_bases.Plo' tmpdepfile='.deps/function_object_bases.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o function_object_bases.lo `test -f 'function_object_bases.cpp' || echo './'`function_object_bases.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c function_object_bases.cpp -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.TPlo -fPIC -DPIC -o .libs/function_object_bases.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c function_object_bases.cpp -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.TPlo -o function_object_bases.o >/dev/null 2>&1
source='sfweight.cpp' object='sfweight.lo' libtool=yes \
depfile='.deps/sfweight.Plo' tmpdepfile='.deps/sfweight.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o sfweight.lo `test -f 'sfweight.cpp' || echo './'`sfweight.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfweight.cpp -MT sfweight.lo -MD -MP -MF .deps/sfweight.TPlo -fPIC -DPIC -o .libs/sfweight.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c sfweight.cpp -MT sfweight.lo -MD -MP -MF .deps/sfweight.TPlo -o sfweight.o >/dev/null 2>&1
source='mapfilter.cpp' object='mapfilter.lo' libtool=yes \
depfile='.deps/mapfilter.Plo' tmpdepfile='.deps/mapfilter.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o mapfilter.lo `test -f 'mapfilter.cpp' || echo './'`mapfilter.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c mapfilter.cpp -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.TPlo -fPIC -DPIC -o .libs/mapfilter.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c mapfilter.cpp -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.TPlo -o mapfilter.o >/dev/null 2>&1
source='skeleton.cpp' object='skeleton.lo' libtool=yes \
depfile='.deps/skeleton.Plo' tmpdepfile='.deps/skeleton.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o skeleton.lo `test -f 'skeleton.cpp' || echo './'`skeleton.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c skeleton.cpp -MT skeleton.lo -MD -MP -MF .deps/skeleton.TPlo -fPIC -DPIC -o .libs/skeleton.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c skeleton.cpp -MT skeleton.lo -MD -MP -MF .deps/skeleton.TPlo -o skeleton.o >/dev/null 2>&1
source='originmatch.cpp' object='originmatch.lo' libtool=yes \
depfile='.deps/originmatch.Plo' tmpdepfile='.deps/originmatch.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o originmatch.lo `test -f 'originmatch.cpp' || echo './'`originmatch.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c originmatch.cpp -MT originmatch.lo -MD -MP -MF .deps/originmatch.TPlo -fPIC -DPIC -o .libs/originmatch.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c originmatch.cpp -MT originmatch.lo -MD -MP -MF .deps/originmatch.TPlo -o originmatch.o >/dev/null 2>&1
source='test_contrib.cpp' object='test_contrib.lo' libtool=yes \
depfile='.deps/test_contrib.Plo' tmpdepfile='.deps/test_contrib.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_contrib.lo `test -f 'test_contrib.cpp' || echo './'`test_contrib.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_contrib.cpp -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.TPlo -fPIC -DPIC -o .libs/test_contrib.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_contrib.cpp -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.TPlo -o test_contrib.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-contrib.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.0
(cd .libs && rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2)
(cd .libs && rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so)
ar cru .libs/libclipper-contrib.a convolution_search.o sfcalc.o edcalc.o sfcalc_obs.o fffear.o sfscale.o function_object_bases.o sfweight.o mapfilter.o skeleton.o originmatch.o test_contrib.o
ranlib .libs/libclipper-contrib.a
creating libclipper-contrib.la
(cd .libs && rm -f libclipper-contrib.la && ln -s ../libclipper-contrib.la libclipper-contrib.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
/usr/bin/install -c .libs/libclipper-contrib.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so; }; })
/usr/bin/install -c .libs/libclipper-contrib.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
/usr/bin/install -c .libs/libclipper-contrib.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
cp -p convolution_search.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/convolution_search.h
cp -p mapfilter.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/mapfilter.h
cp -p sfscale.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfscale.h
cp -p edcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/edcalc.h
cp -p originmatch.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/originmatch.h
cp -p sfweight.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfweight.h
cp -p fffear.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/fffear.h
cp -p sfcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc.h
cp -p skeleton.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/skeleton.h
cp -p function_object_bases.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/function_object_bases.h
cp -p sfcalc_obs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc_obs.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
Making install in cif
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
source='cif_data_io.cpp' object='cif_data_io.lo' libtool=yes \
depfile='.deps/cif_data_io.Plo' tmpdepfile='.deps/cif_data_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cif_data_io.lo `test -f 'cif_data_io.cpp' || echo './'`cif_data_io.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cif_data_io.cpp -MT cif_data_io.lo -MD -MP -MF .deps/cif_data_io.TPlo -fPIC -DPIC -o .libs/cif_data_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cif_data_io.cpp -MT cif_data_io.lo -MD -MP -MF .deps/cif_data_io.TPlo -o cif_data_io.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-cif.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 cif_data_io.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/cif_data_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-cif.so.2 -o .libs/libclipper-cif.so.2.0.0
(cd .libs && rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2)
(cd .libs && rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so)
ar cru .libs/libclipper-cif.a cif_data_io.o
ranlib .libs/libclipper-cif.a
creating libclipper-cif.la
(cd .libs && rm -f libclipper-cif.la && ln -s ../libclipper-cif.la libclipper-cif.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cif.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
/usr/bin/install -c .libs/libclipper-cif.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so; }; })
/usr/bin/install -c .libs/libclipper-cif.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
/usr/bin/install -c .libs/libclipper-cif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
cp -p cif_data_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif/cif_data_io.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
Making install in mmdb
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
source='clipper_mmdb.cpp' object='clipper_mmdb.lo' libtool=yes \
depfile='.deps/clipper_mmdb.Plo' tmpdepfile='.deps/clipper_mmdb.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb.lo `test -f 'clipper_mmdb.cpp' || echo './'`clipper_mmdb.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -fPIC -DPIC -o .libs/clipper_mmdb.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -o clipper_mmdb.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-mmdb.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 clipper_mmdb.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/clipper_mmdb.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-mmdb.so.2 -o .libs/libclipper-mmdb.so.2.0.0
(cd .libs && rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2)
(cd .libs && rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so)
ar cru .libs/libclipper-mmdb.a clipper_mmdb.o
ranlib .libs/libclipper-mmdb.a
creating libclipper-mmdb.la
(cd .libs && rm -f libclipper-mmdb.la && ln -s ../libclipper-mmdb.la libclipper-mmdb.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdb.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
/usr/bin/install -c .libs/libclipper-mmdb.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so; }; })
/usr/bin/install -c .libs/libclipper-mmdb.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
/usr/bin/install -c .libs/libclipper-mmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb/clipper_mmdb.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
Making install in mmdbold
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
source='clipper_mmdb.cpp' object='clipper_mmdb.lo' libtool=yes \
depfile='.deps/clipper_mmdb.Plo' tmpdepfile='.deps/clipper_mmdb.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb.lo `test -f 'clipper_mmdb.cpp' || echo './'`clipper_mmdb.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -fPIC -DPIC -o .libs/clipper_mmdb.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb.cpp -MT clipper_mmdb.lo -MD -MP -MF .deps/clipper_mmdb.TPlo -o clipper_mmdb.o >/dev/null 2>&1
source='clipper_mmdb_wrapper.cpp' object='clipper_mmdb_wrapper.lo' libtool=yes \
depfile='.deps/clipper_mmdb_wrapper.Plo' tmpdepfile='.deps/clipper_mmdb_wrapper.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb_wrapper.lo `test -f 'clipper_mmdb_wrapper.cpp' || echo './'`clipper_mmdb_wrapper.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_wrapper.cpp -MT clipper_mmdb_wrapper.lo -MD -MP -MF .deps/clipper_mmdb_wrapper.TPlo -fPIC -DPIC -o .libs/clipper_mmdb_wrapper.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_wrapper.cpp -MT clipper_mmdb_wrapper.lo -MD -MP -MF .deps/clipper_mmdb_wrapper.TPlo -o clipper_mmdb_wrapper.o >/dev/null 2>&1
source='clipper_mmdb_types.cpp' object='clipper_mmdb_types.lo' libtool=yes \
depfile='.deps/clipper_mmdb_types.Plo' tmpdepfile='.deps/clipper_mmdb_types.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_mmdb_types.lo `test -f 'clipper_mmdb_types.cpp' || echo './'`clipper_mmdb_types.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_types.cpp -MT clipper_mmdb_types.lo -MD -MP -MF .deps/clipper_mmdb_types.TPlo -fPIC -DPIC -o .libs/clipper_mmdb_types.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_mmdb_types.cpp -MT clipper_mmdb_types.lo -MD -MP -MF .deps/clipper_mmdb_types.TPlo -o clipper_mmdb_types.o >/dev/null 2>&1
source='container_mmdb.cpp' object='container_mmdb.lo' libtool=yes \
depfile='.deps/container_mmdb.Plo' tmpdepfile='.deps/container_mmdb.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_mmdb.lo `test -f 'container_mmdb.cpp' || echo './'`container_mmdb.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_mmdb.cpp -MT container_mmdb.lo -MD -MP -MF .deps/container_mmdb.TPlo -fPIC -DPIC -o .libs/container_mmdb.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_mmdb.cpp -MT container_mmdb.lo -MD -MP -MF .deps/container_mmdb.TPlo -o container_mmdb.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-mmdbold.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 clipper_mmdb.lo clipper_mmdb_wrapper.lo clipper_mmdb_types.lo container_mmdb.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/clipper_mmdb.o .libs/clipper_mmdb_wrapper.o .libs/clipper_mmdb_types.o .libs/container_mmdb.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-mmdbold.so.2 -o .libs/libclipper-mmdbold.so.2.0.0
(cd .libs && rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2)
(cd .libs && rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so)
ar cru .libs/libclipper-mmdbold.a clipper_mmdb.o clipper_mmdb_wrapper.o clipper_mmdb_types.o container_mmdb.o
ranlib .libs/libclipper-mmdbold.a
creating libclipper-mmdbold.la
(cd .libs && rm -f libclipper-mmdbold.la && ln -s ../libclipper-mmdbold.la libclipper-mmdbold.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdbold.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
/usr/bin/install -c .libs/libclipper-mmdbold.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2 || { rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so || { rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so; }; })
/usr/bin/install -c .libs/libclipper-mmdbold.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
/usr/bin/install -c .libs/libclipper-mmdbold.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb.h
cp -p clipper_mmdb_wrapper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_wrapper.h
cp -p clipper_mmdb_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_types.h
cp -p container_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/container_mmdb.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
Making install in minimol
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
source='container_minimol.cpp' object='container_minimol.lo' libtool=yes \
depfile='.deps/container_minimol.Plo' tmpdepfile='.deps/container_minimol.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_minimol.lo `test -f 'container_minimol.cpp' || echo './'`container_minimol.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_minimol.cpp -MT container_minimol.lo -MD -MP -MF .deps/container_minimol.TPlo -fPIC -DPIC -o .libs/container_minimol.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_minimol.cpp -MT container_minimol.lo -MD -MP -MF .deps/container_minimol.TPlo -o container_minimol.o >/dev/null 2>&1
source='minimol_data.cpp' object='minimol_data.lo' libtool=yes \
depfile='.deps/minimol_data.Plo' tmpdepfile='.deps/minimol_data.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_data.lo `test -f 'minimol_data.cpp' || echo './'`minimol_data.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_data.cpp -MT minimol_data.lo -MD -MP -MF .deps/minimol_data.TPlo -fPIC -DPIC -o .libs/minimol_data.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_data.cpp -MT minimol_data.lo -MD -MP -MF .deps/minimol_data.TPlo -o minimol_data.o >/dev/null 2>&1
source='minimol_seq.cpp' object='minimol_seq.lo' libtool=yes \
depfile='.deps/minimol_seq.Plo' tmpdepfile='.deps/minimol_seq.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_seq.lo `test -f 'minimol_seq.cpp' || echo './'`minimol_seq.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_seq.cpp -MT minimol_seq.lo -MD -MP -MF .deps/minimol_seq.TPlo -fPIC -DPIC -o .libs/minimol_seq.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_seq.cpp -MT minimol_seq.lo -MD -MP -MF .deps/minimol_seq.TPlo -o minimol_seq.o >/dev/null 2>&1
source='minimol.cpp' object='minimol.lo' libtool=yes \
depfile='.deps/minimol.Plo' tmpdepfile='.deps/minimol.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol.lo `test -f 'minimol.cpp' || echo './'`minimol.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol.cpp -MT minimol.lo -MD -MP -MF .deps/minimol.TPlo -fPIC -DPIC -o .libs/minimol.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol.cpp -MT minimol.lo -MD -MP -MF .deps/minimol.TPlo -o minimol.o >/dev/null 2>&1
source='minimol_io.cpp' object='minimol_io.lo' libtool=yes \
depfile='.deps/minimol_io.Plo' tmpdepfile='.deps/minimol_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_io.lo `test -f 'minimol_io.cpp' || echo './'`minimol_io.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_io.cpp -MT minimol_io.lo -MD -MP -MF .deps/minimol_io.TPlo -fPIC -DPIC -o .libs/minimol_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_io.cpp -MT minimol_io.lo -MD -MP -MF .deps/minimol_io.TPlo -o minimol_io.o >/dev/null 2>&1
source='minimol_utils.cpp' object='minimol_utils.lo' libtool=yes \
depfile='.deps/minimol_utils.Plo' tmpdepfile='.deps/minimol_utils.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o minimol_utils.lo `test -f 'minimol_utils.cpp' || echo './'`minimol_utils.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_utils.cpp -MT minimol_utils.lo -MD -MP -MF .deps/minimol_utils.TPlo -fPIC -DPIC -o .libs/minimol_utils.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c minimol_utils.cpp -MT minimol_utils.lo -MD -MP -MF .deps/minimol_utils.TPlo -o minimol_utils.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-minimol.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 container_minimol.lo minimol_data.lo minimol_seq.lo minimol.lo minimol_io.lo minimol_utils.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/container_minimol.o .libs/minimol_data.o .libs/minimol_seq.o .libs/minimol.o .libs/minimol_io.o .libs/minimol_utils.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-minimol.so.2 -o .libs/libclipper-minimol.so.2.0.0
(cd .libs && rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2)
(cd .libs && rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so)
ar cru .libs/libclipper-minimol.a container_minimol.o minimol_data.o minimol_seq.o minimol.o minimol_io.o minimol_utils.o
ranlib .libs/libclipper-minimol.a
creating libclipper-minimol.la
(cd .libs && rm -f libclipper-minimol.la && ln -s ../libclipper-minimol.la libclipper-minimol.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-minimol.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
/usr/bin/install -c .libs/libclipper-minimol.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so; }; })
/usr/bin/install -c .libs/libclipper-minimol.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
/usr/bin/install -c .libs/libclipper-minimol.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
cp -p container_minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/container_minimol.h
cp -p minimol_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_data.h
cp -p minimol_seq.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_seq.h
cp -p minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol.h
cp -p minimol_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_io.h
cp -p minimol_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_utils.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
Making install in ccp4
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
source='ccp4_mtz_types.cpp' object='ccp4_mtz_types.lo' libtool=yes \
depfile='.deps/ccp4_mtz_types.Plo' tmpdepfile='.deps/ccp4_mtz_types.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_mtz_types.lo `test -f 'ccp4_mtz_types.cpp' || echo './'`ccp4_mtz_types.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_types.cpp -MT ccp4_mtz_types.lo -MD -MP -MF .deps/ccp4_mtz_types.TPlo -fPIC -DPIC -o .libs/ccp4_mtz_types.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_types.cpp -MT ccp4_mtz_types.lo -MD -MP -MF .deps/ccp4_mtz_types.TPlo -o ccp4_mtz_types.o >/dev/null 2>&1
source='ccp4_mtz_io.cpp' object='ccp4_mtz_io.lo' libtool=yes \
depfile='.deps/ccp4_mtz_io.Plo' tmpdepfile='.deps/ccp4_mtz_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_mtz_io.lo `test -f 'ccp4_mtz_io.cpp' || echo './'`ccp4_mtz_io.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_io.cpp -MT ccp4_mtz_io.lo -MD -MP -MF .deps/ccp4_mtz_io.TPlo -fPIC -DPIC -o .libs/ccp4_mtz_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_mtz_io.cpp -MT ccp4_mtz_io.lo -MD -MP -MF .deps/ccp4_mtz_io.TPlo -o ccp4_mtz_io.o >/dev/null 2>&1
source='ccp4_map_io.cpp' object='ccp4_map_io.lo' libtool=yes \
depfile='.deps/ccp4_map_io.Plo' tmpdepfile='.deps/ccp4_map_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_map_io.lo `test -f 'ccp4_map_io.cpp' || echo './'`ccp4_map_io.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_map_io.cpp -MT ccp4_map_io.lo -MD -MP -MF .deps/ccp4_map_io.TPlo -fPIC -DPIC -o .libs/ccp4_map_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_map_io.cpp -MT ccp4_map_io.lo -MD -MP -MF .deps/ccp4_map_io.TPlo -o ccp4_map_io.o >/dev/null 2>&1
source='ccp4_utils.cpp' object='ccp4_utils.lo' libtool=yes \
depfile='.deps/ccp4_utils.Plo' tmpdepfile='.deps/ccp4_utils.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ccp4_utils.lo `test -f 'ccp4_utils.cpp' || echo './'`ccp4_utils.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_utils.cpp -MT ccp4_utils.lo -MD -MP -MF .deps/ccp4_utils.TPlo -fPIC -DPIC -o .libs/ccp4_utils.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ccp4_utils.cpp -MT ccp4_utils.lo -MD -MP -MF .deps/ccp4_utils.TPlo -o ccp4_utils.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-ccp4.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 ccp4_mtz_types.lo ccp4_mtz_io.lo ccp4_map_io.lo ccp4_utils.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/ccp4_mtz_types.o .libs/ccp4_mtz_io.o .libs/ccp4_map_io.o .libs/ccp4_utils.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-ccp4.so.2 -o .libs/libclipper-ccp4.so.2.0.0
(cd .libs && rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2)
(cd .libs && rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so)
ar cru .libs/libclipper-ccp4.a ccp4_mtz_types.o ccp4_mtz_io.o ccp4_map_io.o ccp4_utils.o
ranlib .libs/libclipper-ccp4.a
creating libclipper-ccp4.la
(cd .libs && rm -f libclipper-ccp4.la && ln -s ../libclipper-ccp4.la libclipper-ccp4.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-ccp4.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
/usr/bin/install -c .libs/libclipper-ccp4.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so; }; })
/usr/bin/install -c .libs/libclipper-ccp4.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
/usr/bin/install -c .libs/libclipper-ccp4.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
cp -p ccp4_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_map_io.h
cp -p ccp4_mtz_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_io.h
cp -p ccp4_mtz_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_types.h
cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_utils.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
Making install in cns
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
source='cns_hkl_io.cpp' object='cns_hkl_io.lo' libtool=yes \
depfile='.deps/cns_hkl_io.Plo' tmpdepfile='.deps/cns_hkl_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cns_hkl_io.lo `test -f 'cns_hkl_io.cpp' || echo './'`cns_hkl_io.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_hkl_io.cpp -MT cns_hkl_io.lo -MD -MP -MF .deps/cns_hkl_io.TPlo -fPIC -DPIC -o .libs/cns_hkl_io.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_hkl_io.cpp -MT cns_hkl_io.lo -MD -MP -MF .deps/cns_hkl_io.TPlo -o cns_hkl_io.o >/dev/null 2>&1
source='cns_map_io.cpp' object='cns_map_io.lo' libtool=yes \
depfile='.deps/cns_map_io.Plo' tmpdepfile='.deps/cns_map_io.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cns_map_io.lo `test -f 'cns_map_io.cpp' || echo './'`cns_map_io.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_map_io.cpp -MT cns_map_io.lo -MD -MP -MF .deps/cns_map_io.TPlo -fPIC -DPIC -o .libs/cns_map_io.o
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned char]':
cns_map_io.cpp:472: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = char]':
cns_map_io.cpp:473: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short unsigned int]':
cns_map_io.cpp:474: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = short int]':
cns_map_io.cpp:475: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = unsigned int]':
cns_map_io.cpp:476: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = int]':
cns_map_io.cpp:477: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = float]':
cns_map_io.cpp:478: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_xmap(clipper::Xmap<T>&) [with T = double]':
cns_map_io.cpp:479: instantiated from here
cns_map_io.cpp:201: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:204: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:208: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:211: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:222: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:234: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:242: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:251: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned char]':
cns_map_io.cpp:490: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = char]':
cns_map_io.cpp:491: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short unsigned int]':
cns_map_io.cpp:492: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = short int]':
cns_map_io.cpp:493: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = unsigned int]':
cns_map_io.cpp:494: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = int]':
cns_map_io.cpp:495: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = float]':
cns_map_io.cpp:496: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp: In member function 'void clipper::CNSMAPfile::import_nxmap(clipper::NXmap<T>&) [with T = double]':
cns_map_io.cpp:497: instantiated from here
cns_map_io.cpp:330: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:333: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:337: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:340: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:351: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:363: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:371: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
cns_map_io.cpp:380: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cns_map_io.cpp -MT cns_map_io.lo -MD -MP -MF .deps/cns_map_io.TPlo -o cns_map_io.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-cns.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib cns_hkl_io.lo cns_map_io.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/cns_hkl_io.o .libs/cns_map_io.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-cns.so.0 -o .libs/libclipper-cns.so.0.0.0
(cd .libs && rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0)
(cd .libs && rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so)
ar cru .libs/libclipper-cns.a cns_hkl_io.o cns_map_io.o
ranlib .libs/libclipper-cns.a
creating libclipper-cns.la
(cd .libs && rm -f libclipper-cns.la && ln -s ../libclipper-cns.la libclipper-cns.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cns.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
/usr/bin/install -c .libs/libclipper-cns.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so.0 || { rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so; }; })
/usr/bin/install -c .libs/libclipper-cns.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
/usr/bin/install -c .libs/libclipper-cns.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
cp -p cns_hkl_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_hkl_io.h
cp -p cns_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_map_io.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
Making install in core
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
source='atomsf.cpp' object='atomsf.lo' libtool=yes \
depfile='.deps/atomsf.Plo' tmpdepfile='.deps/atomsf.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c atomsf.cpp -MT atomsf.lo -MD -MP -MF .deps/atomsf.TPlo -fPIC -DPIC -o .libs/atomsf.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c atomsf.cpp -MT atomsf.lo -MD -MP -MF .deps/atomsf.TPlo -o atomsf.o >/dev/null 2>&1
source='coords.cpp' object='coords.lo' libtool=yes \
depfile='.deps/coords.Plo' tmpdepfile='.deps/coords.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c coords.cpp -MT coords.lo -MD -MP -MF .deps/coords.TPlo -fPIC -DPIC -o .libs/coords.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c coords.cpp -MT coords.lo -MD -MP -MF .deps/coords.TPlo -o coords.o >/dev/null 2>&1
source='nxmap_operator.cpp' object='nxmap_operator.lo' libtool=yes \
depfile='.deps/nxmap_operator.Plo' tmpdepfile='.deps/nxmap_operator.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap_operator.cpp -MT nxmap_operator.lo -MD -MP -MF .deps/nxmap_operator.TPlo -fPIC -DPIC -o .libs/nxmap_operator.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap_operator.cpp -MT nxmap_operator.lo -MD -MP -MF .deps/nxmap_operator.TPlo -o nxmap_operator.o >/dev/null 2>&1
source='cell.cpp' object='cell.lo' libtool=yes \
depfile='.deps/cell.Plo' tmpdepfile='.deps/cell.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cell.cpp -MT cell.lo -MD -MP -MF .deps/cell.TPlo -fPIC -DPIC -o .libs/cell.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c cell.cpp -MT cell.lo -MD -MP -MF .deps/cell.TPlo -o cell.o >/dev/null 2>&1
source='derivs.cpp' object='derivs.lo' libtool=yes \
depfile='.deps/derivs.Plo' tmpdepfile='.deps/derivs.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c derivs.cpp -MT derivs.lo -MD -MP -MF .deps/derivs.TPlo -fPIC -DPIC -o .libs/derivs.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c derivs.cpp -MT derivs.lo -MD -MP -MF .deps/derivs.TPlo -o derivs.o >/dev/null 2>&1
source='ramachandran.cpp' object='ramachandran.lo' libtool=yes \
depfile='.deps/ramachandran.Plo' tmpdepfile='.deps/ramachandran.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ramachandran.cpp -MT ramachandran.lo -MD -MP -MF .deps/ramachandran.TPlo -fPIC -DPIC -o .libs/ramachandran.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c ramachandran.cpp -MT ramachandran.lo -MD -MP -MF .deps/ramachandran.TPlo -o ramachandran.o >/dev/null 2>&1
source='clipper_instance.cpp' object='clipper_instance.lo' libtool=yes \
depfile='.deps/clipper_instance.Plo' tmpdepfile='.deps/clipper_instance.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_instance.cpp -MT clipper_instance.lo -MD -MP -MF .deps/clipper_instance.TPlo -fPIC -DPIC -o .libs/clipper_instance.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_instance.cpp -MT clipper_instance.lo -MD -MP -MF .deps/clipper_instance.TPlo -o clipper_instance.o >/dev/null 2>&1
source='fftmap.cpp' object='fftmap.lo' libtool=yes \
depfile='.deps/fftmap.Plo' tmpdepfile='.deps/fftmap.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap.cpp -MT fftmap.lo -MD -MP -MF .deps/fftmap.TPlo -fPIC -DPIC -o .libs/fftmap.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap.cpp -MT fftmap.lo -MD -MP -MF .deps/fftmap.TPlo -o fftmap.o >/dev/null 2>&1
source='resol_basisfn.cpp' object='resol_basisfn.lo' libtool=yes \
depfile='.deps/resol_basisfn.Plo' tmpdepfile='.deps/resol_basisfn.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_basisfn.cpp -MT resol_basisfn.lo -MD -MP -MF .deps/resol_basisfn.TPlo -fPIC -DPIC -o .libs/resol_basisfn.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_basisfn.cpp -MT resol_basisfn.lo -MD -MP -MF .deps/resol_basisfn.TPlo -o resol_basisfn.o >/dev/null 2>&1
source='clipper_memory.cpp' object='clipper_memory.lo' libtool=yes \
depfile='.deps/clipper_memory.Plo' tmpdepfile='.deps/clipper_memory.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_memory.cpp -MT clipper_memory.lo -MD -MP -MF .deps/clipper_memory.TPlo -fPIC -DPIC -o .libs/clipper_memory.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_memory.cpp -MT clipper_memory.lo -MD -MP -MF .deps/clipper_memory.TPlo -o clipper_memory.o >/dev/null 2>&1
source='fftmap_sparse.cpp' object='fftmap_sparse.lo' libtool=yes \
depfile='.deps/fftmap_sparse.Plo' tmpdepfile='.deps/fftmap_sparse.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap_sparse.cpp -MT fftmap_sparse.lo -MD -MP -MF .deps/fftmap_sparse.TPlo -fPIC -DPIC -o .libs/fftmap_sparse.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c fftmap_sparse.cpp -MT fftmap_sparse.lo -MD -MP -MF .deps/fftmap_sparse.TPlo -o fftmap_sparse.o >/dev/null 2>&1
source='resol_fn.cpp' object='resol_fn.lo' libtool=yes \
depfile='.deps/resol_fn.Plo' tmpdepfile='.deps/resol_fn.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_fn.cpp -MT resol_fn.lo -MD -MP -MF .deps/resol_fn.TPlo -fPIC -DPIC -o .libs/resol_fn.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_fn.cpp -MT resol_fn.lo -MD -MP -MF .deps/resol_fn.TPlo -o resol_fn.o >/dev/null 2>&1
source='clipper_message.cpp' object='clipper_message.lo' libtool=yes \
depfile='.deps/clipper_message.Plo' tmpdepfile='.deps/clipper_message.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_message.cpp -MT clipper_message.lo -MD -MP -MF .deps/clipper_message.TPlo -fPIC -DPIC -o .libs/clipper_message.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_message.cpp -MT clipper_message.lo -MD -MP -MF .deps/clipper_message.TPlo -o clipper_message.o >/dev/null 2>&1
source='hkl_compute.cpp' object='hkl_compute.lo' libtool=yes \
depfile='.deps/hkl_compute.Plo' tmpdepfile='.deps/hkl_compute.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_compute.cpp -MT hkl_compute.lo -MD -MP -MF .deps/hkl_compute.TPlo -fPIC -DPIC -o .libs/hkl_compute.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_compute.cpp -MT hkl_compute.lo -MD -MP -MF .deps/hkl_compute.TPlo -o hkl_compute.o >/dev/null 2>&1
source='resol_targetfn.cpp' object='resol_targetfn.lo' libtool=yes \
depfile='.deps/resol_targetfn.Plo' tmpdepfile='.deps/resol_targetfn.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_targetfn.cpp -MT resol_targetfn.lo -MD -MP -MF .deps/resol_targetfn.TPlo -fPIC -DPIC -o .libs/resol_targetfn.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c resol_targetfn.cpp -MT resol_targetfn.lo -MD -MP -MF .deps/resol_targetfn.TPlo -o resol_targetfn.o >/dev/null 2>&1
source='clipper_stats.cpp' object='clipper_stats.lo' libtool=yes \
depfile='.deps/clipper_stats.Plo' tmpdepfile='.deps/clipper_stats.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_stats.cpp -MT clipper_stats.lo -MD -MP -MF .deps/clipper_stats.TPlo -fPIC -DPIC -o .libs/clipper_stats.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_stats.cpp -MT clipper_stats.lo -MD -MP -MF .deps/clipper_stats.TPlo -o clipper_stats.o >/dev/null 2>&1
source='hkl_data.cpp' object='hkl_data.lo' libtool=yes \
depfile='.deps/hkl_data.Plo' tmpdepfile='.deps/hkl_data.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_data.cpp -MT hkl_data.lo -MD -MP -MF .deps/hkl_data.TPlo -fPIC -DPIC -o .libs/hkl_data.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_data.cpp -MT hkl_data.lo -MD -MP -MF .deps/hkl_data.TPlo -o hkl_data.o >/dev/null 2>&1
source='rotation.cpp' object='rotation.lo' libtool=yes \
depfile='.deps/rotation.Plo' tmpdepfile='.deps/rotation.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c rotation.cpp -MT rotation.lo -MD -MP -MF .deps/rotation.TPlo -fPIC -DPIC -o .libs/rotation.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c rotation.cpp -MT rotation.lo -MD -MP -MF .deps/rotation.TPlo -o rotation.o >/dev/null 2>&1
source='clipper_test.cpp' object='clipper_test.lo' libtool=yes \
depfile='.deps/clipper_test.Plo' tmpdepfile='.deps/clipper_test.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_test.cpp -MT clipper_test.lo -MD -MP -MF .deps/clipper_test.TPlo -fPIC -DPIC -o .libs/clipper_test.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_test.cpp -MT clipper_test.lo -MD -MP -MF .deps/clipper_test.TPlo -o clipper_test.o >/dev/null 2>&1
source='hkl_datatypes.cpp' object='hkl_datatypes.lo' libtool=yes \
depfile='.deps/hkl_datatypes.Plo' tmpdepfile='.deps/hkl_datatypes.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_datatypes.cpp -MT hkl_datatypes.lo -MD -MP -MF .deps/hkl_datatypes.TPlo -fPIC -DPIC -o .libs/hkl_datatypes.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_datatypes.cpp -MT hkl_datatypes.lo -MD -MP -MF .deps/hkl_datatypes.TPlo -o hkl_datatypes.o >/dev/null 2>&1
source='spacegroup.cpp' object='spacegroup.lo' libtool=yes \
depfile='.deps/spacegroup.Plo' tmpdepfile='.deps/spacegroup.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup.cpp -MT spacegroup.lo -MD -MP -MF .deps/spacegroup.TPlo -fPIC -DPIC -o .libs/spacegroup.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup.cpp -MT spacegroup.lo -MD -MP -MF .deps/spacegroup.TPlo -o spacegroup.o >/dev/null 2>&1
source='clipper_types.cpp' object='clipper_types.lo' libtool=yes \
depfile='.deps/clipper_types.Plo' tmpdepfile='.deps/clipper_types.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_types.cpp -MT clipper_types.lo -MD -MP -MF .deps/clipper_types.TPlo -fPIC -DPIC -o .libs/clipper_types.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_types.cpp -MT clipper_types.lo -MD -MP -MF .deps/clipper_types.TPlo -o clipper_types.o >/dev/null 2>&1
source='hkl_info.cpp' object='hkl_info.lo' libtool=yes \
depfile='.deps/hkl_info.Plo' tmpdepfile='.deps/hkl_info.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_info.cpp -MT hkl_info.lo -MD -MP -MF .deps/hkl_info.TPlo -fPIC -DPIC -o .libs/hkl_info.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_info.cpp -MT hkl_info.lo -MD -MP -MF .deps/hkl_info.TPlo -o hkl_info.o >/dev/null 2>&1
source='spacegroup_data.cpp' object='spacegroup_data.lo' libtool=yes \
depfile='.deps/spacegroup_data.Plo' tmpdepfile='.deps/spacegroup_data.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup_data.cpp -MT spacegroup_data.lo -MD -MP -MF .deps/spacegroup_data.TPlo -fPIC -DPIC -o .libs/spacegroup_data.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c spacegroup_data.cpp -MT spacegroup_data.lo -MD -MP -MF .deps/spacegroup_data.TPlo -o spacegroup_data.o >/dev/null 2>&1
source='clipper_util.cpp' object='clipper_util.lo' libtool=yes \
depfile='.deps/clipper_util.Plo' tmpdepfile='.deps/clipper_util.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_util.cpp -MT clipper_util.lo -MD -MP -MF .deps/clipper_util.TPlo -fPIC -DPIC -o .libs/clipper_util.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c clipper_util.cpp -MT clipper_util.lo -MD -MP -MF .deps/clipper_util.TPlo -o clipper_util.o >/dev/null 2>&1
source='hkl_lookup.cpp' object='hkl_lookup.lo' libtool=yes \
depfile='.deps/hkl_lookup.Plo' tmpdepfile='.deps/hkl_lookup.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_lookup.cpp -MT hkl_lookup.lo -MD -MP -MF .deps/hkl_lookup.TPlo -fPIC -DPIC -o .libs/hkl_lookup.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_lookup.cpp -MT hkl_lookup.lo -MD -MP -MF .deps/hkl_lookup.TPlo -o hkl_lookup.o >/dev/null 2>&1
source='symop.cpp' object='symop.lo' libtool=yes \
depfile='.deps/symop.Plo' tmpdepfile='.deps/symop.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c symop.cpp -MT symop.lo -MD -MP -MF .deps/symop.TPlo -fPIC -DPIC -o .libs/symop.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c symop.cpp -MT symop.lo -MD -MP -MF .deps/symop.TPlo -o symop.o >/dev/null 2>&1
source='container.cpp' object='container.lo' libtool=yes \
depfile='.deps/container.Plo' tmpdepfile='.deps/container.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container.lo `test -f 'container.cpp' || echo './'`container.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container.cpp -MT container.lo -MD -MP -MF .deps/container.TPlo -fPIC -DPIC -o .libs/container.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container.cpp -MT container.lo -MD -MP -MF .deps/container.TPlo -o container.o >/dev/null 2>&1
source='hkl_operators.cpp' object='hkl_operators.lo' libtool=yes \
depfile='.deps/hkl_operators.Plo' tmpdepfile='.deps/hkl_operators.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_operators.cpp -MT hkl_operators.lo -MD -MP -MF .deps/hkl_operators.TPlo -fPIC -DPIC -o .libs/hkl_operators.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c hkl_operators.cpp -MT hkl_operators.lo -MD -MP -MF .deps/hkl_operators.TPlo -o hkl_operators.o >/dev/null 2>&1
source='container_hkl.cpp' object='container_hkl.lo' libtool=yes \
depfile='.deps/container_hkl.Plo' tmpdepfile='.deps/container_hkl.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_hkl.cpp -MT container_hkl.lo -MD -MP -MF .deps/container_hkl.TPlo -fPIC -DPIC -o .libs/container_hkl.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_hkl.cpp -MT container_hkl.lo -MD -MP -MF .deps/container_hkl.TPlo -o container_hkl.o >/dev/null 2>&1
source='map_interp.cpp' object='map_interp.lo' libtool=yes \
depfile='.deps/map_interp.Plo' tmpdepfile='.deps/map_interp.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_interp.cpp -MT map_interp.lo -MD -MP -MF .deps/map_interp.TPlo -fPIC -DPIC -o .libs/map_interp.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_interp.cpp -MT map_interp.lo -MD -MP -MF .deps/map_interp.TPlo -o map_interp.o >/dev/null 2>&1
source='container_map.cpp' object='container_map.lo' libtool=yes \
depfile='.deps/container_map.Plo' tmpdepfile='.deps/container_map.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_map.cpp -MT container_map.lo -MD -MP -MF .deps/container_map.TPlo -fPIC -DPIC -o .libs/container_map.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_map.cpp -MT container_map.lo -MD -MP -MF .deps/container_map.TPlo -o container_map.o >/dev/null 2>&1
source='map_utils.cpp' object='map_utils.lo' libtool=yes \
depfile='.deps/map_utils.Plo' tmpdepfile='.deps/map_utils.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_utils.cpp -MT map_utils.lo -MD -MP -MF .deps/map_utils.TPlo -fPIC -DPIC -o .libs/map_utils.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c map_utils.cpp -MT map_utils.lo -MD -MP -MF .deps/map_utils.TPlo -o map_utils.o >/dev/null 2>&1
source='xmap.cpp' object='xmap.lo' libtool=yes \
depfile='.deps/xmap.Plo' tmpdepfile='.deps/xmap.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c xmap.cpp -MT xmap.lo -MD -MP -MF .deps/xmap.TPlo -fPIC -DPIC -o .libs/xmap.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c xmap.cpp -MT xmap.lo -MD -MP -MF .deps/xmap.TPlo -o xmap.o >/dev/null 2>&1
source='container_types.cpp' object='container_types.lo' libtool=yes \
depfile='.deps/container_types.Plo' tmpdepfile='.deps/container_types.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_types.cpp -MT container_types.lo -MD -MP -MF .deps/container_types.TPlo -fPIC -DPIC -o .libs/container_types.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c container_types.cpp -MT container_types.lo -MD -MP -MF .deps/container_types.TPlo -o container_types.o >/dev/null 2>&1
source='nxmap.cpp' object='nxmap.lo' libtool=yes \
depfile='.deps/nxmap.Plo' tmpdepfile='.deps/nxmap.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap.cpp -MT nxmap.lo -MD -MP -MF .deps/nxmap.TPlo -fPIC -DPIC -o .libs/nxmap.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c nxmap.cpp -MT nxmap.lo -MD -MP -MF .deps/nxmap.TPlo -o nxmap.o >/dev/null 2>&1
source='test_core.cpp' object='test_core.lo' libtool=yes \
depfile='.deps/test_core.Plo' tmpdepfile='.deps/test_core.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_core.cpp -MT test_core.lo -MD -MP -MF .deps/test_core.TPlo -fPIC -DPIC -o .libs/test_core.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_core.cpp -MT test_core.lo -MD -MP -MF .deps/test_core.TPlo -o test_core.o >/dev/null 2>&1
source='test_data.cpp' object='test_data.lo' libtool=yes \
depfile='.deps/test_data.Plo' tmpdepfile='.deps/test_data.TPlo' \
depmode=gcc3 /bin/sh ../../depcomp \
/bin/sh ../../libtool --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c -o test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_data.cpp -MT test_data.lo -MD -MP -MF .deps/test_data.TPlo -fPIC -DPIC -o .libs/test_data.o
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I../.. -I/usr/include -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -c test_data.cpp -MT test_data.lo -MD -MP -MF .deps/test_data.TPlo -o test_data.o >/dev/null 2>&1
/bin/sh ../../libtool --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o libclipper-core.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -version-info 2:0 atomsf.lo coords.lo nxmap_operator.lo cell.lo derivs.lo ramachandran.lo clipper_instance.lo fftmap.lo resol_basisfn.lo clipper_memory.lo fftmap_sparse.lo resol_fn.lo clipper_message.lo hkl_compute.lo resol_targetfn.lo clipper_stats.lo hkl_data.lo rotation.lo clipper_test.lo hkl_datatypes.lo spacegroup.lo clipper_types.lo hkl_info.lo spacegroup_data.lo clipper_util.lo hkl_lookup.lo symop.lo container.lo hkl_operators.lo container_hkl.lo map_interp.lo container_map.lo map_utils.lo xmap.lo container_types.lo nxmap.lo test_core.lo test_data.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/atomsf.o .libs/coords.o .libs/nxmap_operator.o .libs/cell.o .libs/derivs.o .libs/ramachandran.o .libs/clipper_instance.o .libs/fftmap.o .libs/resol_basisfn.o .libs/clipper_memory.o .libs/fftmap_sparse.o .libs/resol_fn.o .libs/clipper_message.o .libs/hkl_compute.o .libs/resol_targetfn.o .libs/clipper_stats.o .libs/hkl_data.o .libs/rotation.o .libs/clipper_test.o .libs/hkl_datatypes.o .libs/spacegroup.o .libs/clipper_types.o .libs/hkl_info.o .libs/spacegroup_data.o .libs/clipper_util.o .libs/hkl_lookup.o .libs/symop.o .libs/container.o .libs/hkl_operators.o .libs/container_hkl.o .libs/map_interp.o .libs/container_map.o .libs/map_utils.o .libs/xmap.o .libs/container_types.o .libs/nxmap.o .libs/test_core.o .libs/test_data.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.0
(cd .libs && rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2)
(cd .libs && rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so)
ar cru .libs/libclipper-core.a atomsf.o coords.o nxmap_operator.o cell.o derivs.o ramachandran.o clipper_instance.o fftmap.o resol_basisfn.o clipper_memory.o fftmap_sparse.o resol_fn.o clipper_message.o hkl_compute.o resol_targetfn.o clipper_stats.o hkl_data.o rotation.o clipper_test.o hkl_datatypes.o spacegroup.o clipper_types.o hkl_info.o spacegroup_data.o clipper_util.o hkl_lookup.o symop.o container.o hkl_operators.o container_hkl.o map_interp.o container_map.o map_utils.o xmap.o container_types.o nxmap.o test_core.o test_data.o
ranlib .libs/libclipper-core.a
creating libclipper-core.la
(cd .libs && rm -f libclipper-core.la && ln -s ../libclipper-core.la libclipper-core.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
/usr/bin/install -c .libs/libclipper-core.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so; }; })
/usr/bin/install -c .libs/libclipper-core.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
/usr/bin/install -c .libs/libclipper-core.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
cp -p atomsf.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/atomsf.h
cp -p container_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_types.h
cp -p nxmap_operator.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap_operator.h
cp -p cell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/cell.h
cp -p coords.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/coords.h
cp -p ramachandran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/ramachandran.h
cp -p clipper_instance.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_instance.h
cp -p derivs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/derivs.h
cp -p resol_basisfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_basisfn.h
cp -p clipper_memory.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_memory.h
cp -p fftmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap.h
cp -p resol_fn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_fn.h
cp -p clipper_message.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_message.h
cp -p fftmap_sparse.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap_sparse.h
cp -p resol_targetfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_targetfn.h
cp -p clipper_precision.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_precision.h
cp -p hkl_compute.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_compute.h
cp -p rotation.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/rotation.h
cp -p clipper_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_stats.h
cp -p hkl_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_data.h
cp -p spacegroup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup.h
cp -p clipper_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_sysdep.h
cp -p hkl_datatypes.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_datatypes.h
cp -p spacegroup_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup_data.h
cp -p clipper_test.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_test.h
cp -p hkl_info.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_info.h
cp -p symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/symop.h
cp -p clipper_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_types.h
cp -p hkl_lookup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_lookup.h
cp -p clipper_util.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_util.h
cp -p hkl_operators.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_operators.h
cp -p container.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container.h
cp -p map_interp.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_interp.h
cp -p xmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/xmap.h
cp -p container_hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_hkl.h
cp -p map_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_utils.h
cp -p container_map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_map.h
cp -p nxmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[5]: Nothing to be done for `install-exec-am'.
/bin/sh ../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
cp -p clipper-ccp4.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-ccp4.h
cp -p clipper-contrib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-contrib.h
cp -p clipper-phs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-phs.h
cp -p clipper-cctbx.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cctbx.h
cp -p clipper-minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-minimol.h
cp -p clipper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper.h
cp -p clipper-cif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cif.h
cp -p clipper-mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdb.h
cp -p minimal-clipper-hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-hkl.h
cp -p clipper-cns.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cns.h
cp -p clipper-mmdbold.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdbold.h
cp -p minimal-clipper-map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-map.h
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
Making install in examples
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/examples'
Making install in dox
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/dox'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
/bin/sh ./mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin
mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin
/usr/bin/install -c clipper-config /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/clipper-config
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making install in CBFlib
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making install in src
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c -o cbf.lo cbf.c
mkdir .libs
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c cbf.c -fPIC -DPIC -o .libs/cbf.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf.lo -MD -MP -MF .deps/cbf.Tpo -c cbf.c -fPIC -DPIC -o cbf.o >/dev/null 2>&1
mv -f .deps/cbf.Tpo .deps/cbf.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c -o cbf_alloc.lo cbf_alloc.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c cbf_alloc.c -fPIC -DPIC -o .libs/cbf_alloc.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_alloc.lo -MD -MP -MF .deps/cbf_alloc.Tpo -c cbf_alloc.c -fPIC -DPIC -o cbf_alloc.o >/dev/null 2>&1
mv -f .deps/cbf_alloc.Tpo .deps/cbf_alloc.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c -o cbf_ascii.lo cbf_ascii.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c cbf_ascii.c -fPIC -DPIC -o .libs/cbf_ascii.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_ascii.lo -MD -MP -MF .deps/cbf_ascii.Tpo -c cbf_ascii.c -fPIC -DPIC -o cbf_ascii.o >/dev/null 2>&1
mv -f .deps/cbf_ascii.Tpo .deps/cbf_ascii.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c -o cbf_binary.lo cbf_binary.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c cbf_binary.c -fPIC -DPIC -o .libs/cbf_binary.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_binary.lo -MD -MP -MF .deps/cbf_binary.Tpo -c cbf_binary.c -fPIC -DPIC -o cbf_binary.o >/dev/null 2>&1
mv -f .deps/cbf_binary.Tpo .deps/cbf_binary.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c -o cbf_byte_offset.lo cbf_byte_offset.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c cbf_byte_offset.c -fPIC -DPIC -o .libs/cbf_byte_offset.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_byte_offset.lo -MD -MP -MF .deps/cbf_byte_offset.Tpo -c cbf_byte_offset.c -fPIC -DPIC -o cbf_byte_offset.o >/dev/null 2>&1
mv -f .deps/cbf_byte_offset.Tpo .deps/cbf_byte_offset.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c -o cbf_canonical.lo cbf_canonical.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c cbf_canonical.c -fPIC -DPIC -o .libs/cbf_canonical.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_canonical.lo -MD -MP -MF .deps/cbf_canonical.Tpo -c cbf_canonical.c -fPIC -DPIC -o cbf_canonical.o >/dev/null 2>&1
mv -f .deps/cbf_canonical.Tpo .deps/cbf_canonical.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c -o cbf_codes.lo cbf_codes.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c cbf_codes.c -fPIC -DPIC -o .libs/cbf_codes.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_codes.lo -MD -MP -MF .deps/cbf_codes.Tpo -c cbf_codes.c -fPIC -DPIC -o cbf_codes.o >/dev/null 2>&1
mv -f .deps/cbf_codes.Tpo .deps/cbf_codes.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c -o cbf_compress.lo cbf_compress.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c cbf_compress.c -fPIC -DPIC -o .libs/cbf_compress.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_compress.lo -MD -MP -MF .deps/cbf_compress.Tpo -c cbf_compress.c -fPIC -DPIC -o cbf_compress.o >/dev/null 2>&1
mv -f .deps/cbf_compress.Tpo .deps/cbf_compress.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c -o cbf_context.lo cbf_context.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c cbf_context.c -fPIC -DPIC -o .libs/cbf_context.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_context.lo -MD -MP -MF .deps/cbf_context.Tpo -c cbf_context.c -fPIC -DPIC -o cbf_context.o >/dev/null 2>&1
mv -f .deps/cbf_context.Tpo .deps/cbf_context.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c -o cbf_file.lo cbf_file.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c cbf_file.c -fPIC -DPIC -o .libs/cbf_file.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_file.lo -MD -MP -MF .deps/cbf_file.Tpo -c cbf_file.c -fPIC -DPIC -o cbf_file.o >/dev/null 2>&1
mv -f .deps/cbf_file.Tpo .deps/cbf_file.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c -o cbf_lex.lo cbf_lex.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c cbf_lex.c -fPIC -DPIC -o .libs/cbf_lex.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_lex.lo -MD -MP -MF .deps/cbf_lex.Tpo -c cbf_lex.c -fPIC -DPIC -o cbf_lex.o >/dev/null 2>&1
mv -f .deps/cbf_lex.Tpo .deps/cbf_lex.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c -o cbf_packed.lo cbf_packed.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c cbf_packed.c -fPIC -DPIC -o .libs/cbf_packed.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_packed.lo -MD -MP -MF .deps/cbf_packed.Tpo -c cbf_packed.c -fPIC -DPIC -o cbf_packed.o >/dev/null 2>&1
mv -f .deps/cbf_packed.Tpo .deps/cbf_packed.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c -o cbf_predictor.lo cbf_predictor.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c cbf_predictor.c -fPIC -DPIC -o .libs/cbf_predictor.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_predictor.lo -MD -MP -MF .deps/cbf_predictor.Tpo -c cbf_predictor.c -fPIC -DPIC -o cbf_predictor.o >/dev/null 2>&1
mv -f .deps/cbf_predictor.Tpo .deps/cbf_predictor.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c -o cbf_read_binary.lo cbf_read_binary.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c cbf_read_binary.c -fPIC -DPIC -o .libs/cbf_read_binary.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_binary.lo -MD -MP -MF .deps/cbf_read_binary.Tpo -c cbf_read_binary.c -fPIC -DPIC -o cbf_read_binary.o >/dev/null 2>&1
mv -f .deps/cbf_read_binary.Tpo .deps/cbf_read_binary.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c -o cbf_read_mime.lo cbf_read_mime.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c cbf_read_mime.c -fPIC -DPIC -o .libs/cbf_read_mime.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_read_mime.lo -MD -MP -MF .deps/cbf_read_mime.Tpo -c cbf_read_mime.c -fPIC -DPIC -o cbf_read_mime.o >/dev/null 2>&1
mv -f .deps/cbf_read_mime.Tpo .deps/cbf_read_mime.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c -o cbf_simple.lo cbf_simple.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c cbf_simple.c -fPIC -DPIC -o .libs/cbf_simple.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_simple.lo -MD -MP -MF .deps/cbf_simple.Tpo -c cbf_simple.c -fPIC -DPIC -o cbf_simple.o >/dev/null 2>&1
mv -f .deps/cbf_simple.Tpo .deps/cbf_simple.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c -o cbf_string.lo cbf_string.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c cbf_string.c -fPIC -DPIC -o .libs/cbf_string.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_string.lo -MD -MP -MF .deps/cbf_string.Tpo -c cbf_string.c -fPIC -DPIC -o cbf_string.o >/dev/null 2>&1
mv -f .deps/cbf_string.Tpo .deps/cbf_string.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c -o cbf_stx.lo cbf_stx.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c cbf_stx.c -fPIC -DPIC -o .libs/cbf_stx.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_stx.lo -MD -MP -MF .deps/cbf_stx.Tpo -c cbf_stx.c -fPIC -DPIC -o cbf_stx.o >/dev/null 2>&1
mv -f .deps/cbf_stx.Tpo .deps/cbf_stx.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c -o cbf_tree.lo cbf_tree.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c cbf_tree.c -fPIC -DPIC -o .libs/cbf_tree.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_tree.lo -MD -MP -MF .deps/cbf_tree.Tpo -c cbf_tree.c -fPIC -DPIC -o cbf_tree.o >/dev/null 2>&1
mv -f .deps/cbf_tree.Tpo .deps/cbf_tree.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c -o cbf_uncompressed.lo cbf_uncompressed.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c cbf_uncompressed.c -fPIC -DPIC -o .libs/cbf_uncompressed.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_uncompressed.lo -MD -MP -MF .deps/cbf_uncompressed.Tpo -c cbf_uncompressed.c -fPIC -DPIC -o cbf_uncompressed.o >/dev/null 2>&1
mv -f .deps/cbf_uncompressed.Tpo .deps/cbf_uncompressed.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c -o cbf_write.lo cbf_write.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c cbf_write.c -fPIC -DPIC -o .libs/cbf_write.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write.lo -MD -MP -MF .deps/cbf_write.Tpo -c cbf_write.c -fPIC -DPIC -o cbf_write.o >/dev/null 2>&1
mv -f .deps/cbf_write.Tpo .deps/cbf_write.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c -o cbf_write_binary.lo cbf_write_binary.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c cbf_write_binary.c -fPIC -DPIC -o .libs/cbf_write_binary.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT cbf_write_binary.lo -MD -MP -MF .deps/cbf_write_binary.Tpo -c cbf_write_binary.c -fPIC -DPIC -o cbf_write_binary.o >/dev/null 2>&1
mv -f .deps/cbf_write_binary.Tpo .deps/cbf_write_binary.Plo
/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c -o md5c.lo md5c.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c md5c.c -fPIC -DPIC -o .libs/md5c.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -I../include -g -O0 -MT md5c.lo -MD -MP -MF .deps/md5c.Tpo -c md5c.c -fPIC -DPIC -o md5c.o >/dev/null 2>&1
mv -f .deps/md5c.Tpo .deps/md5c.Plo
/bin/sh ../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I../include -g -O0 -static -o libcbf.la cbf.lo cbf_alloc.lo cbf_ascii.lo cbf_binary.lo cbf_byte_offset.lo cbf_canonical.lo cbf_codes.lo cbf_compress.lo cbf_context.lo cbf_file.lo cbf_lex.lo cbf_packed.lo cbf_predictor.lo cbf_read_binary.lo cbf_read_mime.lo cbf_simple.lo cbf_string.lo cbf_stx.lo cbf_tree.lo cbf_uncompressed.lo cbf_write.lo cbf_write_binary.lo md5c.lo -lm
ar cru .libs/libcbf.a cbf.o cbf_alloc.o cbf_ascii.o cbf_binary.o cbf_byte_offset.o cbf_canonical.o cbf_codes.o cbf_compress.o cbf_context.o cbf_file.o cbf_lex.o cbf_packed.o cbf_predictor.o cbf_read_binary.o cbf_read_mime.o cbf_simple.o cbf_string.o cbf_stx.o cbf_tree.o cbf_uncompressed.o cbf_write.o cbf_write_binary.o md5c.o
ranlib .libs/libcbf.a
creating libcbf.la
(cd .libs && rm -f libcbf.la && ln -s ../libcbf.la libcbf.la)
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[6]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[6]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[6]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[6]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Nothing to be done for `install-exec-am'.
make[5]: Nothing to be done for `install-data-am'.
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
Making install in Bruker
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c -o FrmRoutines.lo FrmRoutines.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o .libs/FrmRoutines.o
FrmRoutines.cpp: In function 'long int* ReadFrameFile(char*, FRM_HEADER*)':
FrmRoutines.cpp:91: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:97: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:108: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:108: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:114: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:116: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:132: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:137: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:139: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:139: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:149: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:161: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:173: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:197: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
FrmRoutines.cpp:199: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:215: warning: format '%-35ld' expects type 'long int', but argument 4 has type 'int'
FrmRoutines.cpp:217: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:244: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:246: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp: In function 'long int SaveFrameFile(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:349: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:349: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:351: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:351: warning: unknown conversion type character 'I' in format
FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 3 has type 'INT64*'
FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 4 has type 'INT64*'
FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 5 has type 'INT64*'
FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 6 has type 'INT64*'
FrmRoutines.cpp:354: warning: format '%12d' expects type 'int*', but argument 7 has type 'INT64*'
FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 3 has type 'INT64'
FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 4 has type 'INT64'
FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 5 has type 'INT64'
FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 6 has type 'INT64'
FrmRoutines.cpp:356: warning: format '%12d' expects type 'int', but argument 7 has type 'INT64'
FrmRoutines.cpp: In function 'long int SaveFrameFile_Old(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:448: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:448: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
FrmRoutines.cpp:457: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:461: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:482: warning: format '%9d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:482: warning: format '%7d' expects type 'int', but argument 4 has type 'long int'
FrmRoutines.cpp:491: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:495: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:501: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:505: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:522: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:524: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:543: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FrmRoutines.cpp:559: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:566: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:578: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:585: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:592: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp: In function 'long int SaveFrameFile_New(char*, FRM_HEADER*, long int*)':
FrmRoutines.cpp:634: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 3 has type 'long int*'
FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 4 has type 'long int*'
FrmRoutines.cpp:638: warning: format '%d' expects type 'int*', but argument 5 has type 'long int*'
FrmRoutines.cpp:873: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:880: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:892: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:900: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:910: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:920: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FrmRoutines.cpp:928: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FrmRoutines.lo -MD -MP -MF .deps/FrmRoutines.Tpo -c FrmRoutines.cpp -fPIC -DPIC -o FrmRoutines.o >/dev/null 2>&1
mv -f .deps/FrmRoutines.Tpo .deps/FrmRoutines.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c -o FRM_LIB.lo FRM_LIB.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o .libs/FRM_LIB.o
FRM_LIB.c: In function 'frm_open_file':
FRM_LIB.c:134: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
FRM_LIB.c: In function 'frm_shrink':
FRM_LIB.c:589: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:591: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:599: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:601: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:601: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c: In function 'frm_convert_header_longs':
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 3 has type 'long int *'
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 4 has type 'long int *'
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 5 has type 'long int *'
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 6 has type 'long int *'
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 7 has type 'long int *'
FRM_LIB.c:619: warning: format '%d' expects type 'int *', but argument 8 has type 'long int *'
FRM_LIB.c:629: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:639: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:639: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:649: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:661: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:673: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:685: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c: In function 'frm_convert_header':
FRM_LIB.c:797: warning: format '%-72ld' expects type 'long int', but argument 3 has type 'int'
FRM_LIB.c: In function 'frm_trim':
FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:997: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1021: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1023: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c: In function 'frm_truncate':
FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 2 has type 'long int'
FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1082: warning: format '%d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1106: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1108: warning: format '%10d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:1116: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:1118: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1118: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c: In function 'frm_reorientate':
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 5 has type 'long int'
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 6 has type 'long int'
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 7 has type 'long int'
FRM_LIB.c:1302: warning: format '%12d' expects type 'int', but argument 8 has type 'long int'
FRM_LIB.c:1304: warning: format '%12d' expects type 'int', but argument 3 has type 'long int'
FRM_LIB.c:1304: warning: format '%12d' expects type 'int', but argument 4 has type 'long int'
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT FRM_LIB.lo -MD -MP -MF .deps/FRM_LIB.Tpo -c FRM_LIB.c -fPIC -DPIC -o FRM_LIB.o >/dev/null 2>&1
mv -f .deps/FRM_LIB.Tpo .deps/FRM_LIB.Plo
/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o libbruker.la FrmRoutines.lo FRM_LIB.lo -lm
ar cru .libs/libbruker.a FrmRoutines.o FRM_LIB.o
ranlib .libs/libbruker.a
creating libbruker.la
(cd .libs && rm -f libbruker.la && ln -s ../libbruker.la libbruker.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
Making install in MAR
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c -o mar300_header.lo mar300_header.c
mkdir .libs
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o .libs/mar300_header.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar300_header.lo -MD -MP -MF .deps/mar300_header.Tpo -c mar300_header.c -fPIC -DPIC -o mar300_header.o >/dev/null 2>&1
mv -f .deps/mar300_header.Tpo .deps/mar300_header.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c -o mar345_header.lo mar345_header.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o .libs/mar345_header.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT mar345_header.lo -MD -MP -MF .deps/mar345_header.Tpo -c mar345_header.c -fPIC -DPIC -o mar345_header.o >/dev/null 2>&1
mv -f .deps/mar345_header.Tpo .deps/mar345_header.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c -o marcif.lo marcif.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o .libs/marcif.o
marcif.c: In function 'GetCIFData':
marcif.c:1926: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
marcif.c:1929: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
marcif.c:1932: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
marcif.c: In function 'PutCIFData':
marcif.c:2007: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
marcif.c:2008: warning: format '%11d' expects type 'int', but argument 2 has type 'size_t'
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT marcif.lo -MD -MP -MF .deps/marcif.Tpo -c marcif.c -fPIC -DPIC -o marcif.o >/dev/null 2>&1
mv -f .deps/marcif.Tpo .deps/marcif.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c -o nb_header.lo nb_header.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o .libs/nb_header.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT nb_header.lo -MD -MP -MF .deps/nb_header.Tpo -c nb_header.c -fPIC -DPIC -o nb_header.o >/dev/null 2>&1
mv -f .deps/nb_header.Tpo .deps/nb_header.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o .libs/swap.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -fPIC -DPIC -o swap.o >/dev/null 2>&1
mv -f .deps/swap.Tpo .deps/swap.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o .libs/utils.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.c -fPIC -DPIC -o utils.o >/dev/null 2>&1
mv -f .deps/utils.Tpo .deps/utils.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c -o pck.lo pck.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o .libs/pck.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I../CBFlib/src -I../CBFlib/include -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT pck.lo -MD -MP -MF .deps/pck.Tpo -c pck.c -fPIC -DPIC -o pck.o >/dev/null 2>&1
mv -f .deps/pck.Tpo .deps/pck.Plo
/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -g -O0 -static -o libmar.la mar300_header.lo mar345_header.lo marcif.lo nb_header.lo swap.lo utils.lo pck.lo -lm
ar cru .libs/libmar.a mar300_header.o mar345_header.o marcif.o nb_header.o swap.o utils.o pck.o
ranlib .libs/libmar.a
creating libmar.la
(cd .libs && rm -f libmar.la && ln -s ../libmar.la libmar.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
Making install in Rigaku
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c -o ReadRAXISImages.lo ReadRAXISImages.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o .libs/ReadRAXISImages.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT ReadRAXISImages.lo -MD -MP -MF .deps/ReadRAXISImages.Tpo -c ReadRAXISImages.cpp -fPIC -DPIC -o ReadRAXISImages.o >/dev/null 2>&1
mv -f .deps/ReadRAXISImages.Tpo .deps/ReadRAXISImages.Plo
/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o librigaku.la ReadRAXISImages.lo -lm
ar cru .libs/librigaku.a ReadRAXISImages.o
ranlib .libs/librigaku.a
creating librigaku.la
(cd .libs && rm -f librigaku.la && ln -s ../librigaku.la librigaku.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
Making install in jpg
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c -o jcapimin.lo jcapimin.c
mkdir .libs
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c jcapimin.c -fPIC -DPIC -o .libs/jcapimin.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapimin.lo -MD -MP -MF .deps/jcapimin.Tpo -c jcapimin.c -fPIC -DPIC -o jcapimin.o >/dev/null 2>&1
mv -f .deps/jcapimin.Tpo .deps/jcapimin.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c -o jcapistd.lo jcapistd.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c jcapistd.c -fPIC -DPIC -o .libs/jcapistd.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcapistd.lo -MD -MP -MF .deps/jcapistd.Tpo -c jcapistd.c -fPIC -DPIC -o jcapistd.o >/dev/null 2>&1
mv -f .deps/jcapistd.Tpo .deps/jcapistd.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c -o jccoefct.lo jccoefct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c jccoefct.c -fPIC -DPIC -o .libs/jccoefct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccoefct.lo -MD -MP -MF .deps/jccoefct.Tpo -c jccoefct.c -fPIC -DPIC -o jccoefct.o >/dev/null 2>&1
mv -f .deps/jccoefct.Tpo .deps/jccoefct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c -o jccolor.lo jccolor.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c jccolor.c -fPIC -DPIC -o .libs/jccolor.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jccolor.lo -MD -MP -MF .deps/jccolor.Tpo -c jccolor.c -fPIC -DPIC -o jccolor.o >/dev/null 2>&1
mv -f .deps/jccolor.Tpo .deps/jccolor.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c -o jcdctmgr.lo jcdctmgr.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c jcdctmgr.c -fPIC -DPIC -o .libs/jcdctmgr.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcdctmgr.lo -MD -MP -MF .deps/jcdctmgr.Tpo -c jcdctmgr.c -fPIC -DPIC -o jcdctmgr.o >/dev/null 2>&1
mv -f .deps/jcdctmgr.Tpo .deps/jcdctmgr.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c -o jchuff.lo jchuff.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c jchuff.c -fPIC -DPIC -o .libs/jchuff.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jchuff.lo -MD -MP -MF .deps/jchuff.Tpo -c jchuff.c -fPIC -DPIC -o jchuff.o >/dev/null 2>&1
mv -f .deps/jchuff.Tpo .deps/jchuff.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c -o jcinit.lo jcinit.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c jcinit.c -fPIC -DPIC -o .libs/jcinit.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcinit.lo -MD -MP -MF .deps/jcinit.Tpo -c jcinit.c -fPIC -DPIC -o jcinit.o >/dev/null 2>&1
mv -f .deps/jcinit.Tpo .deps/jcinit.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c -o jcmainct.lo jcmainct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c jcmainct.c -fPIC -DPIC -o .libs/jcmainct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmainct.lo -MD -MP -MF .deps/jcmainct.Tpo -c jcmainct.c -fPIC -DPIC -o jcmainct.o >/dev/null 2>&1
mv -f .deps/jcmainct.Tpo .deps/jcmainct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c -o jcmarker.lo jcmarker.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c jcmarker.c -fPIC -DPIC -o .libs/jcmarker.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmarker.lo -MD -MP -MF .deps/jcmarker.Tpo -c jcmarker.c -fPIC -DPIC -o jcmarker.o >/dev/null 2>&1
mv -f .deps/jcmarker.Tpo .deps/jcmarker.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c -o jcmaster.lo jcmaster.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c jcmaster.c -fPIC -DPIC -o .libs/jcmaster.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcmaster.lo -MD -MP -MF .deps/jcmaster.Tpo -c jcmaster.c -fPIC -DPIC -o jcmaster.o >/dev/null 2>&1
mv -f .deps/jcmaster.Tpo .deps/jcmaster.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c -o jcomapi.lo jcomapi.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c jcomapi.c -fPIC -DPIC -o .libs/jcomapi.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcomapi.lo -MD -MP -MF .deps/jcomapi.Tpo -c jcomapi.c -fPIC -DPIC -o jcomapi.o >/dev/null 2>&1
mv -f .deps/jcomapi.Tpo .deps/jcomapi.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c -o jcparam.lo jcparam.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c jcparam.c -fPIC -DPIC -o .libs/jcparam.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcparam.lo -MD -MP -MF .deps/jcparam.Tpo -c jcparam.c -fPIC -DPIC -o jcparam.o >/dev/null 2>&1
mv -f .deps/jcparam.Tpo .deps/jcparam.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c -o jcphuff.lo jcphuff.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c jcphuff.c -fPIC -DPIC -o .libs/jcphuff.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcphuff.lo -MD -MP -MF .deps/jcphuff.Tpo -c jcphuff.c -fPIC -DPIC -o jcphuff.o >/dev/null 2>&1
mv -f .deps/jcphuff.Tpo .deps/jcphuff.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c -o jcprepct.lo jcprepct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c jcprepct.c -fPIC -DPIC -o .libs/jcprepct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcprepct.lo -MD -MP -MF .deps/jcprepct.Tpo -c jcprepct.c -fPIC -DPIC -o jcprepct.o >/dev/null 2>&1
mv -f .deps/jcprepct.Tpo .deps/jcprepct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c -o jcsample.lo jcsample.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c jcsample.c -fPIC -DPIC -o .libs/jcsample.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jcsample.lo -MD -MP -MF .deps/jcsample.Tpo -c jcsample.c -fPIC -DPIC -o jcsample.o >/dev/null 2>&1
mv -f .deps/jcsample.Tpo .deps/jcsample.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c -o jctrans.lo jctrans.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c jctrans.c -fPIC -DPIC -o .libs/jctrans.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jctrans.lo -MD -MP -MF .deps/jctrans.Tpo -c jctrans.c -fPIC -DPIC -o jctrans.o >/dev/null 2>&1
mv -f .deps/jctrans.Tpo .deps/jctrans.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c -o jdapimin.lo jdapimin.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c jdapimin.c -fPIC -DPIC -o .libs/jdapimin.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapimin.lo -MD -MP -MF .deps/jdapimin.Tpo -c jdapimin.c -fPIC -DPIC -o jdapimin.o >/dev/null 2>&1
mv -f .deps/jdapimin.Tpo .deps/jdapimin.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c -o jdapistd.lo jdapistd.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c jdapistd.c -fPIC -DPIC -o .libs/jdapistd.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdapistd.lo -MD -MP -MF .deps/jdapistd.Tpo -c jdapistd.c -fPIC -DPIC -o jdapistd.o >/dev/null 2>&1
mv -f .deps/jdapistd.Tpo .deps/jdapistd.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c -o jdatadst.lo jdatadst.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c jdatadst.c -fPIC -DPIC -o .libs/jdatadst.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatadst.lo -MD -MP -MF .deps/jdatadst.Tpo -c jdatadst.c -fPIC -DPIC -o jdatadst.o >/dev/null 2>&1
mv -f .deps/jdatadst.Tpo .deps/jdatadst.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c -o jdatasrc.lo jdatasrc.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c jdatasrc.c -fPIC -DPIC -o .libs/jdatasrc.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdatasrc.lo -MD -MP -MF .deps/jdatasrc.Tpo -c jdatasrc.c -fPIC -DPIC -o jdatasrc.o >/dev/null 2>&1
mv -f .deps/jdatasrc.Tpo .deps/jdatasrc.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c -o jdcoefct.lo jdcoefct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c jdcoefct.c -fPIC -DPIC -o .libs/jdcoefct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcoefct.lo -MD -MP -MF .deps/jdcoefct.Tpo -c jdcoefct.c -fPIC -DPIC -o jdcoefct.o >/dev/null 2>&1
mv -f .deps/jdcoefct.Tpo .deps/jdcoefct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c -o jdcolor.lo jdcolor.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c jdcolor.c -fPIC -DPIC -o .libs/jdcolor.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdcolor.lo -MD -MP -MF .deps/jdcolor.Tpo -c jdcolor.c -fPIC -DPIC -o jdcolor.o >/dev/null 2>&1
mv -f .deps/jdcolor.Tpo .deps/jdcolor.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c -o jddctmgr.lo jddctmgr.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c jddctmgr.c -fPIC -DPIC -o .libs/jddctmgr.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jddctmgr.lo -MD -MP -MF .deps/jddctmgr.Tpo -c jddctmgr.c -fPIC -DPIC -o jddctmgr.o >/dev/null 2>&1
mv -f .deps/jddctmgr.Tpo .deps/jddctmgr.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c -o jdhuff.lo jdhuff.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c jdhuff.c -fPIC -DPIC -o .libs/jdhuff.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdhuff.lo -MD -MP -MF .deps/jdhuff.Tpo -c jdhuff.c -fPIC -DPIC -o jdhuff.o >/dev/null 2>&1
mv -f .deps/jdhuff.Tpo .deps/jdhuff.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c -o jdinput.lo jdinput.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c jdinput.c -fPIC -DPIC -o .libs/jdinput.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdinput.lo -MD -MP -MF .deps/jdinput.Tpo -c jdinput.c -fPIC -DPIC -o jdinput.o >/dev/null 2>&1
mv -f .deps/jdinput.Tpo .deps/jdinput.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c -o jdmainct.lo jdmainct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c jdmainct.c -fPIC -DPIC -o .libs/jdmainct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmainct.lo -MD -MP -MF .deps/jdmainct.Tpo -c jdmainct.c -fPIC -DPIC -o jdmainct.o >/dev/null 2>&1
mv -f .deps/jdmainct.Tpo .deps/jdmainct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c -o jdmarker.lo jdmarker.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c jdmarker.c -fPIC -DPIC -o .libs/jdmarker.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmarker.lo -MD -MP -MF .deps/jdmarker.Tpo -c jdmarker.c -fPIC -DPIC -o jdmarker.o >/dev/null 2>&1
mv -f .deps/jdmarker.Tpo .deps/jdmarker.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c -o jdmaster.lo jdmaster.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c jdmaster.c -fPIC -DPIC -o .libs/jdmaster.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmaster.lo -MD -MP -MF .deps/jdmaster.Tpo -c jdmaster.c -fPIC -DPIC -o jdmaster.o >/dev/null 2>&1
mv -f .deps/jdmaster.Tpo .deps/jdmaster.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c -o jdmerge.lo jdmerge.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c jdmerge.c -fPIC -DPIC -o .libs/jdmerge.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdmerge.lo -MD -MP -MF .deps/jdmerge.Tpo -c jdmerge.c -fPIC -DPIC -o jdmerge.o >/dev/null 2>&1
mv -f .deps/jdmerge.Tpo .deps/jdmerge.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c -o jdphuff.lo jdphuff.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c jdphuff.c -fPIC -DPIC -o .libs/jdphuff.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdphuff.lo -MD -MP -MF .deps/jdphuff.Tpo -c jdphuff.c -fPIC -DPIC -o jdphuff.o >/dev/null 2>&1
mv -f .deps/jdphuff.Tpo .deps/jdphuff.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c -o jdpostct.lo jdpostct.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c jdpostct.c -fPIC -DPIC -o .libs/jdpostct.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdpostct.lo -MD -MP -MF .deps/jdpostct.Tpo -c jdpostct.c -fPIC -DPIC -o jdpostct.o >/dev/null 2>&1
mv -f .deps/jdpostct.Tpo .deps/jdpostct.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c -o jdsample.lo jdsample.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c jdsample.c -fPIC -DPIC -o .libs/jdsample.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdsample.lo -MD -MP -MF .deps/jdsample.Tpo -c jdsample.c -fPIC -DPIC -o jdsample.o >/dev/null 2>&1
mv -f .deps/jdsample.Tpo .deps/jdsample.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c -o jdtrans.lo jdtrans.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c jdtrans.c -fPIC -DPIC -o .libs/jdtrans.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jdtrans.lo -MD -MP -MF .deps/jdtrans.Tpo -c jdtrans.c -fPIC -DPIC -o jdtrans.o >/dev/null 2>&1
mv -f .deps/jdtrans.Tpo .deps/jdtrans.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c -o jerror.lo jerror.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c jerror.c -fPIC -DPIC -o .libs/jerror.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jerror.lo -MD -MP -MF .deps/jerror.Tpo -c jerror.c -fPIC -DPIC -o jerror.o >/dev/null 2>&1
mv -f .deps/jerror.Tpo .deps/jerror.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c -o jfdctflt.lo jfdctflt.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c jfdctflt.c -fPIC -DPIC -o .libs/jfdctflt.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctflt.lo -MD -MP -MF .deps/jfdctflt.Tpo -c jfdctflt.c -fPIC -DPIC -o jfdctflt.o >/dev/null 2>&1
mv -f .deps/jfdctflt.Tpo .deps/jfdctflt.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c -o jfdctfst.lo jfdctfst.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c jfdctfst.c -fPIC -DPIC -o .libs/jfdctfst.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctfst.lo -MD -MP -MF .deps/jfdctfst.Tpo -c jfdctfst.c -fPIC -DPIC -o jfdctfst.o >/dev/null 2>&1
mv -f .deps/jfdctfst.Tpo .deps/jfdctfst.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c -o jfdctint.lo jfdctint.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c jfdctint.c -fPIC -DPIC -o .libs/jfdctint.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jfdctint.lo -MD -MP -MF .deps/jfdctint.Tpo -c jfdctint.c -fPIC -DPIC -o jfdctint.o >/dev/null 2>&1
mv -f .deps/jfdctint.Tpo .deps/jfdctint.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c -o jidctflt.lo jidctflt.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c jidctflt.c -fPIC -DPIC -o .libs/jidctflt.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctflt.lo -MD -MP -MF .deps/jidctflt.Tpo -c jidctflt.c -fPIC -DPIC -o jidctflt.o >/dev/null 2>&1
mv -f .deps/jidctflt.Tpo .deps/jidctflt.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c -o jidctfst.lo jidctfst.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c jidctfst.c -fPIC -DPIC -o .libs/jidctfst.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctfst.lo -MD -MP -MF .deps/jidctfst.Tpo -c jidctfst.c -fPIC -DPIC -o jidctfst.o >/dev/null 2>&1
mv -f .deps/jidctfst.Tpo .deps/jidctfst.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c -o jidctint.lo jidctint.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c jidctint.c -fPIC -DPIC -o .libs/jidctint.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctint.lo -MD -MP -MF .deps/jidctint.Tpo -c jidctint.c -fPIC -DPIC -o jidctint.o >/dev/null 2>&1
mv -f .deps/jidctint.Tpo .deps/jidctint.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c -o jidctred.lo jidctred.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c jidctred.c -fPIC -DPIC -o .libs/jidctred.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jidctred.lo -MD -MP -MF .deps/jidctred.Tpo -c jidctred.c -fPIC -DPIC -o jidctred.o >/dev/null 2>&1
mv -f .deps/jidctred.Tpo .deps/jidctred.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c -o jquant1.lo jquant1.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c jquant1.c -fPIC -DPIC -o .libs/jquant1.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant1.lo -MD -MP -MF .deps/jquant1.Tpo -c jquant1.c -fPIC -DPIC -o jquant1.o >/dev/null 2>&1
mv -f .deps/jquant1.Tpo .deps/jquant1.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c -o jquant2.lo jquant2.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c jquant2.c -fPIC -DPIC -o .libs/jquant2.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jquant2.lo -MD -MP -MF .deps/jquant2.Tpo -c jquant2.c -fPIC -DPIC -o jquant2.o >/dev/null 2>&1
mv -f .deps/jquant2.Tpo .deps/jquant2.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c -o jutils.lo jutils.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c jutils.c -fPIC -DPIC -o .libs/jutils.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jutils.lo -MD -MP -MF .deps/jutils.Tpo -c jutils.c -fPIC -DPIC -o jutils.o >/dev/null 2>&1
mv -f .deps/jutils.Tpo .deps/jutils.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c -o jmemmgr.lo jmemmgr.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c jmemmgr.c -fPIC -DPIC -o .libs/jmemmgr.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemmgr.lo -MD -MP -MF .deps/jmemmgr.Tpo -c jmemmgr.c -fPIC -DPIC -o jmemmgr.o >/dev/null 2>&1
mv -f .deps/jmemmgr.Tpo .deps/jmemmgr.Plo
/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c -o jmemnobs.lo jmemnobs.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c jmemnobs.c -fPIC -DPIC -o .libs/jmemnobs.o
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT jmemnobs.lo -MD -MP -MF .deps/jmemnobs.Tpo -c jmemnobs.c -fPIC -DPIC -o jmemnobs.o >/dev/null 2>&1
mv -f .deps/jmemnobs.Tpo .deps/jmemnobs.Plo
/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -g -O0 -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -version-info 62:0 -o libjpeg.la jcapimin.lo jcapistd.lo jccoefct.lo jccolor.lo jcdctmgr.lo jchuff.lo jcinit.lo jcmainct.lo jcmarker.lo jcmaster.lo jcomapi.lo jcparam.lo jcphuff.lo jcprepct.lo jcsample.lo jctrans.lo jdapimin.lo jdapistd.lo jdatadst.lo jdatasrc.lo jdcoefct.lo jdcolor.lo jddctmgr.lo jdhuff.lo jdinput.lo jdmainct.lo jdmarker.lo jdmaster.lo jdmerge.lo jdphuff.lo jdpostct.lo jdsample.lo jdtrans.lo jerror.lo jfdctflt.lo jfdctfst.lo jfdctint.lo jidctflt.lo jidctfst.lo jidctint.lo jidctred.lo jquant1.lo jquant2.lo jutils.lo jmemmgr.lo jmemnobs.lo -lm
libtool: link: warning: `-version-info/-version-number' is ignored for convenience libraries
ar cru .libs/libjpeg.a .libs/jcapimin.o .libs/jcapistd.o .libs/jccoefct.o .libs/jccolor.o .libs/jcdctmgr.o .libs/jchuff.o .libs/jcinit.o .libs/jcmainct.o .libs/jcmarker.o .libs/jcmaster.o .libs/jcomapi.o .libs/jcparam.o .libs/jcphuff.o .libs/jcprepct.o .libs/jcsample.o .libs/jctrans.o .libs/jdapimin.o .libs/jdapistd.o .libs/jdatadst.o .libs/jdatasrc.o .libs/jdcoefct.o .libs/jdcolor.o .libs/jddctmgr.o .libs/jdhuff.o .libs/jdinput.o .libs/jdmainct.o .libs/jdmarker.o .libs/jdmaster.o .libs/jdmerge.o .libs/jdphuff.o .libs/jdpostct.o .libs/jdsample.o .libs/jdtrans.o .libs/jerror.o .libs/jfdctflt.o .libs/jfdctfst.o .libs/jfdctint.o .libs/jidctflt.o .libs/jidctfst.o .libs/jidctint.o .libs/jidctred.o .libs/jquant1.o .libs/jquant2.o .libs/jutils.o .libs/jmemmgr.o .libs/jmemnobs.o
ranlib .libs/libjpeg.a
creating libjpeg.la
(cd .libs && rm -f libjpeg.la && ln -s ../libjpeg.la libjpeg.la)
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c -o DiffractionImageJpeg.lo DiffractionImageJpeg.cpp
mkdir .libs
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o .libs/DiffractionImageJpeg.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJpeg.lo -MD -MP -MF .deps/DiffractionImageJpeg.Tpo -c DiffractionImageJpeg.cpp -fPIC -DPIC -o DiffractionImageJpeg.o >/dev/null 2>&1
mv -f .deps/DiffractionImageJpeg.Tpo .deps/DiffractionImageJpeg.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c -o DiffractionImageADSC.lo DiffractionImageADSC.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o .libs/DiffractionImageADSC.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageADSC.lo -MD -MP -MF .deps/DiffractionImageADSC.Tpo -c DiffractionImageADSC.cpp -fPIC -DPIC -o DiffractionImageADSC.o >/dev/null 2>&1
mv -f .deps/DiffractionImageADSC.Tpo .deps/DiffractionImageADSC.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c -o DiffractionImageCBF.lo DiffractionImageCBF.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o .libs/DiffractionImageCBF.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCBF.lo -MD -MP -MF .deps/DiffractionImageCBF.Tpo -c DiffractionImageCBF.cpp -fPIC -DPIC -o DiffractionImageCBF.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCBF.Tpo .deps/DiffractionImageCBF.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c -o DiffractionImageMAR.lo DiffractionImageMAR.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o .libs/DiffractionImageMAR.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageMAR.lo -MD -MP -MF .deps/DiffractionImageMAR.Tpo -c DiffractionImageMAR.cpp -fPIC -DPIC -o DiffractionImageMAR.o >/dev/null 2>&1
mv -f .deps/DiffractionImageMAR.Tpo .deps/DiffractionImageMAR.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c -o DiffractionImageRAXIS.lo DiffractionImageRAXIS.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o .libs/DiffractionImageRAXIS.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRAXIS.lo -MD -MP -MF .deps/DiffractionImageRAXIS.Tpo -c DiffractionImageRAXIS.cpp -fPIC -DPIC -o DiffractionImageRAXIS.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRAXIS.Tpo .deps/DiffractionImageRAXIS.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c -o DiffractionImageRaxisDtrek.lo DiffractionImageRaxisDtrek.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o .libs/DiffractionImageRaxisDtrek.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaxisDtrek.lo -MD -MP -MF .deps/DiffractionImageRaxisDtrek.Tpo -c DiffractionImageRaxisDtrek.cpp -fPIC -DPIC -o DiffractionImageRaxisDtrek.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRaxisDtrek.Tpo .deps/DiffractionImageRaxisDtrek.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c -o DiffractionImageSaturn.lo DiffractionImageSaturn.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o .libs/DiffractionImageSaturn.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageSaturn.lo -MD -MP -MF .deps/DiffractionImageSaturn.Tpo -c DiffractionImageSaturn.cpp -fPIC -DPIC -o DiffractionImageSaturn.o >/dev/null 2>&1
mv -f .deps/DiffractionImageSaturn.Tpo .deps/DiffractionImageSaturn.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c -o DiffractionImageBruker.lo DiffractionImageBruker.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o .libs/DiffractionImageBruker.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageBruker.lo -MD -MP -MF .deps/DiffractionImageBruker.Tpo -c DiffractionImageBruker.cpp -fPIC -DPIC -o DiffractionImageBruker.o >/dev/null 2>&1
mv -f .deps/DiffractionImageBruker.Tpo .deps/DiffractionImageBruker.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c -o DiffractionImageOxford.lo DiffractionImageOxford.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o .libs/DiffractionImageOxford.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageOxford.lo -MD -MP -MF .deps/DiffractionImageOxford.Tpo -c DiffractionImageOxford.cpp -fPIC -DPIC -o DiffractionImageOxford.o >/dev/null 2>&1
mv -f .deps/DiffractionImageOxford.Tpo .deps/DiffractionImageOxford.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c -o DiffractionImageTiff.lo DiffractionImageTiff.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o .libs/DiffractionImageTiff.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTiff.lo -MD -MP -MF .deps/DiffractionImageTiff.Tpo -c DiffractionImageTiff.cpp -fPIC -DPIC -o DiffractionImageTiff.o >/dev/null 2>&1
mv -f .deps/DiffractionImageTiff.Tpo .deps/DiffractionImageTiff.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c -o DiffractionImage.lo DiffractionImage.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o .libs/DiffractionImage.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImage.lo -MD -MP -MF .deps/DiffractionImage.Tpo -c DiffractionImage.cpp -fPIC -DPIC -o DiffractionImage.o >/dev/null 2>&1
mv -f .deps/DiffractionImage.Tpo .deps/DiffractionImage.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c -o DiffractionImageRaw.lo DiffractionImageRaw.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o .libs/DiffractionImageRaw.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageRaw.lo -MD -MP -MF .deps/DiffractionImageRaw.Tpo -c DiffractionImageRaw.cpp -fPIC -DPIC -o DiffractionImageRaw.o >/dev/null 2>&1
mv -f .deps/DiffractionImageRaw.Tpo .deps/DiffractionImageRaw.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c -o DiffractionImageUtility.lo DiffractionImageUtility.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o .libs/DiffractionImageUtility.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageUtility.lo -MD -MP -MF .deps/DiffractionImageUtility.Tpo -c DiffractionImageUtility.cpp -fPIC -DPIC -o DiffractionImageUtility.o >/dev/null 2>&1
mv -f .deps/DiffractionImageUtility.Tpo .deps/DiffractionImageUtility.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c -o DiffractionImageCalculations.lo DiffractionImageCalculations.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o .libs/DiffractionImageCalculations.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCalculations.lo -MD -MP -MF .deps/DiffractionImageCalculations.Tpo -c DiffractionImageCalculations.cpp -fPIC -DPIC -o DiffractionImageCalculations.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCalculations.Tpo .deps/DiffractionImageCalculations.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c -o DiffractionImageImgOperations.lo DiffractionImageImgOperations.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o .libs/DiffractionImageImgOperations.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageImgOperations.lo -MD -MP -MF .deps/DiffractionImageImgOperations.Tpo -c DiffractionImageImgOperations.cpp -fPIC -DPIC -o DiffractionImageImgOperations.o >/dev/null 2>&1
mv -f .deps/DiffractionImageImgOperations.Tpo .deps/DiffractionImageImgOperations.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c -o DiffractionImageException.lo DiffractionImageException.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o .libs/DiffractionImageException.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageException.lo -MD -MP -MF .deps/DiffractionImageException.Tpo -c DiffractionImageException.cpp -fPIC -DPIC -o DiffractionImageException.o >/dev/null 2>&1
mv -f .deps/DiffractionImageException.Tpo .deps/DiffractionImageException.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c -o DiffractionImageCompare.lo DiffractionImageCompare.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o .libs/DiffractionImageCompare.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageCompare.lo -MD -MP -MF .deps/DiffractionImageCompare.Tpo -c DiffractionImageCompare.cpp -fPIC -DPIC -o DiffractionImageCompare.o >/dev/null 2>&1
mv -f .deps/DiffractionImageCompare.Tpo .deps/DiffractionImageCompare.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c -o DiffractionImageAutomask.lo DiffractionImageAutomask.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o .libs/DiffractionImageAutomask.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageAutomask.lo -MD -MP -MF .deps/DiffractionImageAutomask.Tpo -c DiffractionImageAutomask.cpp -fPIC -DPIC -o DiffractionImageAutomask.o >/dev/null 2>&1
mv -f .deps/DiffractionImageAutomask.Tpo .deps/DiffractionImageAutomask.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c -o Profile.lo Profile.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o .libs/Profile.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Profile.lo -MD -MP -MF .deps/Profile.Tpo -c Profile.cpp -fPIC -DPIC -o Profile.o >/dev/null 2>&1
mv -f .deps/Profile.Tpo .deps/Profile.Plo
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c -o Peak.lo Peak.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o .libs/Peak.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT Peak.lo -MD -MP -MF .deps/Peak.Tpo -c Peak.cpp -fPIC -DPIC -o Peak.o >/dev/null 2>&1
mv -f .deps/Peak.Tpo .deps/Peak.Plo
/bin/sh ./libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c -o dps_peaksearch_cn.lo dps_peaksearch_cn.c
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o .libs/dps_peaksearch_cn.o
dps_peaksearch_cn.c: In function 'dps_peaksearch_cn':
dps_peaksearch_cn.c:403: warning: passing argument 4 of 'qsort' from incompatible pointer type
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT dps_peaksearch_cn.lo -MD -MP -MF .deps/dps_peaksearch_cn.Tpo -c dps_peaksearch_cn.c -fPIC -DPIC -o dps_peaksearch_cn.o >/dev/null 2>&1
mv -f .deps/dps_peaksearch_cn.Tpo .deps/dps_peaksearch_cn.Plo
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -static -o libDiffImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageJpeg.lo DiffractionImageADSC.lo DiffractionImageCBF.lo DiffractionImageMAR.lo DiffractionImageRAXIS.lo DiffractionImageRaxisDtrek.lo DiffractionImageSaturn.lo DiffractionImageBruker.lo DiffractionImageOxford.lo DiffractionImageTiff.lo DiffractionImage.lo DiffractionImageRaw.lo DiffractionImageUtility.lo DiffractionImageCalculations.lo DiffractionImageImgOperations.lo DiffractionImageException.lo DiffractionImageCompare.lo DiffractionImageAutomask.lo Profile.lo Peak.lo dps_peaksearch_cn.lo -lm
ar cru .libs/libDiffImage.a DiffractionImageJpeg.o DiffractionImageADSC.o DiffractionImageCBF.o DiffractionImageMAR.o DiffractionImageRAXIS.o DiffractionImageRaxisDtrek.o DiffractionImageSaturn.o DiffractionImageBruker.o DiffractionImageOxford.o DiffractionImageTiff.o DiffractionImage.o DiffractionImageRaw.o DiffractionImageUtility.o DiffractionImageCalculations.o DiffractionImageImgOperations.o DiffractionImageException.o DiffractionImageCompare.o DiffractionImageAutomask.o Profile.o Peak.o dps_peaksearch_cn.o
ranlib .libs/libDiffImage.a
creating libDiffImage.la
(cd .libs && rm -f libDiffImage.la && ln -s ../libDiffImage.la libDiffImage.la)
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c -o DiffractionImagePythonInterface.lo DiffractionImagePythonInterface.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o .libs/DiffractionImagePythonInterface.o
DiffractionImagePythonInterface.cpp: In function 'void SWIG_Python_AddErrorMsg(const char*)':
DiffractionImagePythonInterface.cpp:870: warning: format not a string literal and no format arguments
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImagePythonInterface.lo -MD -MP -MF .deps/DiffractionImagePythonInterface.Tpo -c DiffractionImagePythonInterface.cpp -fPIC -DPIC -o DiffractionImagePythonInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImagePythonInterface.Tpo .deps/DiffractionImagePythonInterface.Plo
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o lib_DiffractionImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImagePythonInterface.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImagePythonInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,lib_DiffractionImage.so.0 -o .libs/lib_DiffractionImage.so.0.0.0
(cd .libs && rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0)
(cd .libs && rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so)
rm -fr .libs/lib_DiffractionImage.lax
mkdir .libs/lib_DiffractionImage.lax
rm -fr .libs/lib_DiffractionImage.lax/libcbf.a
mkdir .libs/lib_DiffractionImage.lax/libcbf.a
(cd .libs/lib_DiffractionImage.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
rm -fr .libs/lib_DiffractionImage.lax/libbruker.a
mkdir .libs/lib_DiffractionImage.lax/libbruker.a
(cd .libs/lib_DiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/lib_DiffractionImage.lax/libmar.a
mkdir .libs/lib_DiffractionImage.lax/libmar.a
(cd .libs/lib_DiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/lib_DiffractionImage.lax/librigaku.a
mkdir .libs/lib_DiffractionImage.lax/librigaku.a
(cd .libs/lib_DiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
rm -fr .libs/lib_DiffractionImage.lax/libjpeg.a
mkdir .libs/lib_DiffractionImage.lax/libjpeg.a
(cd .libs/lib_DiffractionImage.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
ar cru .libs/lib_DiffractionImage.a DiffractionImagePythonInterface.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_alloc.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_ascii.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_byte_offset.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_canonical.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_codes.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_compress.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_context.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_file.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_lex.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_packed.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_predictor.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_read_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_read_mime.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_simple.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_string.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_stx.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_tree.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_uncompressed.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_write.o .libs/lib_DiffractionImage.lax/libcbf.a/cbf_write_binary.o .libs/lib_DiffractionImage.lax/libcbf.a/md5c.o .libs/lib_DiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/lib_DiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/lib_DiffractionImage.lax/libmar.a/mar300_header.o .libs/lib_DiffractionImage.lax/libmar.a/mar345_header.o .libs/lib_DiffractionImage.lax/libmar.a/marcif.o .libs/lib_DiffractionImage.lax/libmar.a/nb_header.o .libs/lib_DiffractionImage.lax/libmar.a/swap.o .libs/lib_DiffractionImage.lax/libmar.a/utils.o .libs/lib_DiffractionImage.lax/libmar.a/pck.o .libs/lib_DiffractionImage.lax/librigaku.a/ReadRAXISImages.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcapimin.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcapistd.o .libs/lib_DiffractionImage.lax/libjpeg.a/jccoefct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jccolor.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcdctmgr.o .libs/lib_DiffractionImage.lax/libjpeg.a/jchuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcinit.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmainct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmarker.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcmaster.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcomapi.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcparam.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcphuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcprepct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jcsample.o .libs/lib_DiffractionImage.lax/libjpeg.a/jctrans.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdapimin.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdapistd.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdatadst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdatasrc.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdcoefct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdcolor.o .libs/lib_DiffractionImage.lax/libjpeg.a/jddctmgr.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdhuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdinput.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmainct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmarker.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmaster.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdmerge.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdphuff.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdpostct.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdsample.o .libs/lib_DiffractionImage.lax/libjpeg.a/jdtrans.o .libs/lib_DiffractionImage.lax/libjpeg.a/jerror.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctflt.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctfst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jfdctint.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctflt.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctfst.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctint.o .libs/lib_DiffractionImage.lax/libjpeg.a/jidctred.o .libs/lib_DiffractionImage.lax/libjpeg.a/jquant1.o .libs/lib_DiffractionImage.lax/libjpeg.a/jquant2.o .libs/lib_DiffractionImage.lax/libjpeg.a/jutils.o .libs/lib_DiffractionImage.lax/libjpeg.a/jmemmgr.o .libs/lib_DiffractionImage.lax/libjpeg.a/jmemnobs.o
ranlib .libs/lib_DiffractionImage.a
rm -fr .libs/lib_DiffractionImage.lax
creating lib_DiffractionImage.la
(cd .libs && rm -f lib_DiffractionImage.la && ln -s ../lib_DiffractionImage.la lib_DiffractionImage.la)
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c -o DiffractionImageTclInterface.lo DiffractionImageTclInterface.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageTclInterface.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageTclInterface.lo -MD -MP -MF .deps/DiffractionImageTclInterface.Tpo -c DiffractionImageTclInterface.cpp -fPIC -DPIC -o DiffractionImageTclInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImageTclInterface.Tpo .deps/DiffractionImageTclInterface.Plo
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o libDiffractionImage.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageTclInterface.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImageTclInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,libDiffractionImage.so.0 -o .libs/libDiffractionImage.so.0.0.0
(cd .libs && rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0)
(cd .libs && rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so)
rm -fr .libs/libDiffractionImage.lax
mkdir .libs/libDiffractionImage.lax
rm -fr .libs/libDiffractionImage.lax/libcbf.a
mkdir .libs/libDiffractionImage.lax/libcbf.a
(cd .libs/libDiffractionImage.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
rm -fr .libs/libDiffractionImage.lax/libbruker.a
mkdir .libs/libDiffractionImage.lax/libbruker.a
(cd .libs/libDiffractionImage.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/libDiffractionImage.lax/libmar.a
mkdir .libs/libDiffractionImage.lax/libmar.a
(cd .libs/libDiffractionImage.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/libDiffractionImage.lax/librigaku.a
mkdir .libs/libDiffractionImage.lax/librigaku.a
(cd .libs/libDiffractionImage.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
rm -fr .libs/libDiffractionImage.lax/libjpeg.a
mkdir .libs/libDiffractionImage.lax/libjpeg.a
(cd .libs/libDiffractionImage.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
ar cru .libs/libDiffractionImage.a DiffractionImageTclInterface.o .libs/libDiffractionImage.lax/libcbf.a/cbf.o .libs/libDiffractionImage.lax/libcbf.a/cbf_alloc.o .libs/libDiffractionImage.lax/libcbf.a/cbf_ascii.o .libs/libDiffractionImage.lax/libcbf.a/cbf_binary.o .libs/libDiffractionImage.lax/libcbf.a/cbf_byte_offset.o .libs/libDiffractionImage.lax/libcbf.a/cbf_canonical.o .libs/libDiffractionImage.lax/libcbf.a/cbf_codes.o .libs/libDiffractionImage.lax/libcbf.a/cbf_compress.o .libs/libDiffractionImage.lax/libcbf.a/cbf_context.o .libs/libDiffractionImage.lax/libcbf.a/cbf_file.o .libs/libDiffractionImage.lax/libcbf.a/cbf_lex.o .libs/libDiffractionImage.lax/libcbf.a/cbf_packed.o .libs/libDiffractionImage.lax/libcbf.a/cbf_predictor.o .libs/libDiffractionImage.lax/libcbf.a/cbf_read_binary.o .libs/libDiffractionImage.lax/libcbf.a/cbf_read_mime.o .libs/libDiffractionImage.lax/libcbf.a/cbf_simple.o .libs/libDiffractionImage.lax/libcbf.a/cbf_string.o .libs/libDiffractionImage.lax/libcbf.a/cbf_stx.o .libs/libDiffractionImage.lax/libcbf.a/cbf_tree.o .libs/libDiffractionImage.lax/libcbf.a/cbf_uncompressed.o .libs/libDiffractionImage.lax/libcbf.a/cbf_write.o .libs/libDiffractionImage.lax/libcbf.a/cbf_write_binary.o .libs/libDiffractionImage.lax/libcbf.a/md5c.o .libs/libDiffractionImage.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImage.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImage.lax/libmar.a/mar300_header.o .libs/libDiffractionImage.lax/libmar.a/mar345_header.o .libs/libDiffractionImage.lax/libmar.a/marcif.o .libs/libDiffractionImage.lax/libmar.a/nb_header.o .libs/libDiffractionImage.lax/libmar.a/swap.o .libs/libDiffractionImage.lax/libmar.a/utils.o .libs/libDiffractionImage.lax/libmar.a/pck.o .libs/libDiffractionImage.lax/librigaku.a/ReadRAXISImages.o .libs/libDiffractionImage.lax/libjpeg.a/jcapimin.o .libs/libDiffractionImage.lax/libjpeg.a/jcapistd.o .libs/libDiffractionImage.lax/libjpeg.a/jccoefct.o .libs/libDiffractionImage.lax/libjpeg.a/jccolor.o .libs/libDiffractionImage.lax/libjpeg.a/jcdctmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jchuff.o .libs/libDiffractionImage.lax/libjpeg.a/jcinit.o .libs/libDiffractionImage.lax/libjpeg.a/jcmainct.o .libs/libDiffractionImage.lax/libjpeg.a/jcmarker.o .libs/libDiffractionImage.lax/libjpeg.a/jcmaster.o .libs/libDiffractionImage.lax/libjpeg.a/jcomapi.o .libs/libDiffractionImage.lax/libjpeg.a/jcparam.o .libs/libDiffractionImage.lax/libjpeg.a/jcphuff.o .libs/libDiffractionImage.lax/libjpeg.a/jcprepct.o .libs/libDiffractionImage.lax/libjpeg.a/jcsample.o .libs/libDiffractionImage.lax/libjpeg.a/jctrans.o .libs/libDiffractionImage.lax/libjpeg.a/jdapimin.o .libs/libDiffractionImage.lax/libjpeg.a/jdapistd.o .libs/libDiffractionImage.lax/libjpeg.a/jdatadst.o .libs/libDiffractionImage.lax/libjpeg.a/jdatasrc.o .libs/libDiffractionImage.lax/libjpeg.a/jdcoefct.o .libs/libDiffractionImage.lax/libjpeg.a/jdcolor.o .libs/libDiffractionImage.lax/libjpeg.a/jddctmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jdhuff.o .libs/libDiffractionImage.lax/libjpeg.a/jdinput.o .libs/libDiffractionImage.lax/libjpeg.a/jdmainct.o .libs/libDiffractionImage.lax/libjpeg.a/jdmarker.o .libs/libDiffractionImage.lax/libjpeg.a/jdmaster.o .libs/libDiffractionImage.lax/libjpeg.a/jdmerge.o .libs/libDiffractionImage.lax/libjpeg.a/jdphuff.o .libs/libDiffractionImage.lax/libjpeg.a/jdpostct.o .libs/libDiffractionImage.lax/libjpeg.a/jdsample.o .libs/libDiffractionImage.lax/libjpeg.a/jdtrans.o .libs/libDiffractionImage.lax/libjpeg.a/jerror.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctflt.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctfst.o .libs/libDiffractionImage.lax/libjpeg.a/jfdctint.o .libs/libDiffractionImage.lax/libjpeg.a/jidctflt.o .libs/libDiffractionImage.lax/libjpeg.a/jidctfst.o .libs/libDiffractionImage.lax/libjpeg.a/jidctint.o .libs/libDiffractionImage.lax/libjpeg.a/jidctred.o .libs/libDiffractionImage.lax/libjpeg.a/jquant1.o .libs/libDiffractionImage.lax/libjpeg.a/jquant2.o .libs/libDiffractionImage.lax/libjpeg.a/jutils.o .libs/libDiffractionImage.lax/libjpeg.a/jmemmgr.o .libs/libDiffractionImage.lax/libjpeg.a/jmemnobs.o
ranlib .libs/libDiffractionImage.a
rm -fr .libs/libDiffractionImage.lax
creating libDiffractionImage.la
(cd .libs && rm -f libDiffractionImage.la && ln -s ../libDiffractionImage.la libDiffractionImage.la)
/bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c -o DiffractionImageJavaInterface.lo DiffractionImageJavaInterface.cpp
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o .libs/DiffractionImageJavaInterface.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" "-DPACKAGE_STRING=\"DiffractionImage 6.1.1\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT DiffractionImageJavaInterface.lo -MD -MP -MF .deps/DiffractionImageJavaInterface.Tpo -c DiffractionImageJavaInterface.cpp -fPIC -DPIC -o DiffractionImageJavaInterface.o >/dev/null 2>&1
mv -f .deps/DiffractionImageJavaInterface.Tpo .deps/DiffractionImageJavaInterface.Plo
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -shared --whole-archive libDiffImage.la ./CBFlib/src/libcbf.la ./Bruker/libbruker.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la --no-whole-archive -rpath '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib' -o libDiffractionImaJ.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib DiffractionImageJavaInterface.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/DiffractionImageJavaInterface.o -Wl,--whole-archive ./CBFlib/src/.libs/libcbf.a ./Bruker/.libs/libbruker.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -Wl,--no-whole-archive ./.libs/libDiffImage.a -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -Wl,-soname -Wl,libDiffractionImaJ.so.0 -o .libs/libDiffractionImaJ.so.0.0.0
(cd .libs && rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0)
(cd .libs && rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so)
rm -fr .libs/libDiffractionImaJ.lax
mkdir .libs/libDiffractionImaJ.lax
rm -fr .libs/libDiffractionImaJ.lax/libcbf.a
mkdir .libs/libDiffractionImaJ.lax/libcbf.a
(cd .libs/libDiffractionImaJ.lax/libcbf.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./CBFlib/src/.libs/libcbf.a)
rm -fr .libs/libDiffractionImaJ.lax/libbruker.a
mkdir .libs/libDiffractionImaJ.lax/libbruker.a
(cd .libs/libDiffractionImaJ.lax/libbruker.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Bruker/.libs/libbruker.a)
rm -fr .libs/libDiffractionImaJ.lax/libmar.a
mkdir .libs/libDiffractionImaJ.lax/libmar.a
(cd .libs/libDiffractionImaJ.lax/libmar.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./MAR/.libs/libmar.a)
rm -fr .libs/libDiffractionImaJ.lax/librigaku.a
mkdir .libs/libDiffractionImaJ.lax/librigaku.a
(cd .libs/libDiffractionImaJ.lax/librigaku.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./Rigaku/.libs/librigaku.a)
rm -fr .libs/libDiffractionImaJ.lax/libjpeg.a
mkdir .libs/libDiffractionImaJ.lax/libjpeg.a
(cd .libs/libDiffractionImaJ.lax/libjpeg.a && ar x /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/./jpg/.libs/libjpeg.a)
ar cru .libs/libDiffractionImaJ.a DiffractionImageJavaInterface.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_alloc.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_ascii.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_byte_offset.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_canonical.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_codes.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_compress.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_context.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_file.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_lex.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_packed.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_predictor.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_read_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_read_mime.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_simple.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_string.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_stx.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_tree.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_uncompressed.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_write.o .libs/libDiffractionImaJ.lax/libcbf.a/cbf_write_binary.o .libs/libDiffractionImaJ.lax/libcbf.a/md5c.o .libs/libDiffractionImaJ.lax/libbruker.a/FrmRoutines.o .libs/libDiffractionImaJ.lax/libbruker.a/FRM_LIB.o .libs/libDiffractionImaJ.lax/libmar.a/mar300_header.o .libs/libDiffractionImaJ.lax/libmar.a/mar345_header.o .libs/libDiffractionImaJ.lax/libmar.a/marcif.o .libs/libDiffractionImaJ.lax/libmar.a/nb_header.o .libs/libDiffractionImaJ.lax/libmar.a/swap.o .libs/libDiffractionImaJ.lax/libmar.a/utils.o .libs/libDiffractionImaJ.lax/libmar.a/pck.o .libs/libDiffractionImaJ.lax/librigaku.a/ReadRAXISImages.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcapimin.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcapistd.o .libs/libDiffractionImaJ.lax/libjpeg.a/jccoefct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jccolor.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcdctmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a/jchuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcinit.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmainct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmarker.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcmaster.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcomapi.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcparam.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcphuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcprepct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jcsample.o .libs/libDiffractionImaJ.lax/libjpeg.a/jctrans.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdapimin.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdapistd.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdatadst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdatasrc.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdcoefct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdcolor.o .libs/libDiffractionImaJ.lax/libjpeg.a/jddctmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdhuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdinput.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmainct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmarker.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmaster.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdmerge.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdphuff.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdpostct.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdsample.o .libs/libDiffractionImaJ.lax/libjpeg.a/jdtrans.o .libs/libDiffractionImaJ.lax/libjpeg.a/jerror.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctflt.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctfst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jfdctint.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctflt.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctfst.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctint.o .libs/libDiffractionImaJ.lax/libjpeg.a/jidctred.o .libs/libDiffractionImaJ.lax/libjpeg.a/jquant1.o .libs/libDiffractionImaJ.lax/libjpeg.a/jquant2.o .libs/libDiffractionImaJ.lax/libjpeg.a/jutils.o .libs/libDiffractionImaJ.lax/libjpeg.a/jmemmgr.o .libs/libDiffractionImaJ.lax/libjpeg.a/jmemnobs.o
ranlib .libs/libDiffractionImaJ.a
rm -fr .libs/libDiffractionImaJ.lax
creating libDiffractionImaJ.la
(cd .libs && rm -f libDiffractionImaJ.la && ln -s ../libDiffractionImaJ.la libDiffractionImaJ.la)
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT automask.o -MD -MP -MF .deps/automask.Tpo -c -o automask.o automask.cpp
mv -f .deps/automask.Tpo .deps/automask.Po
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o automask automask.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
x86_64-pc-linux-gnu-g++ -g -O0 -o automask automask.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT diffdump.o -MD -MP -MF .deps/diffdump.Tpo -c -o diffdump.o diffdump.cpp
mv -f .deps/diffdump.Tpo .deps/diffdump.Po
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o diffdump diffdump.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
x86_64-pc-linux-gnu-g++ -g -O0 -o diffdump diffdump.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT printpeaks.o -MD -MP -MF .deps/printpeaks.Tpo -c -o printpeaks.o printpeaks.cpp
mv -f .deps/printpeaks.Tpo .deps/printpeaks.Po
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o printpeaks printpeaks.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
x86_64-pc-linux-gnu-g++ -g -O0 -o printpeaks printpeaks.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"DiffractionImage\" -DPACKAGE_TARNAME=\"diffractionimage\" -DPACKAGE_VERSION=\"6.1.1\" -DPACKAGE_STRING=\"DiffractionImage\ 6.1.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"diffractionimage\" -DVERSION=\"6.1.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_LIBM=1 -I. -I./MAR -I./CBFlib/src -I./CBFlib/include -I./jpg -I/usr/include/python2.5 -I/home/justin/.gentoo/java-config-2/current-user-vm/include -I/home/justin/.gentoo/java-config-2/current-user-vm/include/linux -g -O0 -MT diff2jpeg.o -MD -MP -MF .deps/diff2jpeg.Tpo -c -o diff2jpeg.o diff2jpeg.cpp
mv -f .deps/diff2jpeg.Tpo .deps/diff2jpeg.Po
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -g -O0 -o diff2jpeg diff2jpeg.o libDiffImage.la ./Bruker/libbruker.la ./CBFlib/src/libcbf.la ./MAR/libmar.la ./Rigaku/librigaku.la ./jpg/libjpeg.la -lm
x86_64-pc-linux-gnu-g++ -g -O0 -o diff2jpeg diff2jpeg.o ./.libs/libDiffImage.a ./Bruker/.libs/libbruker.a ./CBFlib/src/.libs/libcbf.a ./MAR/.libs/libmar.a ./Rigaku/.libs/librigaku.a ./jpg/.libs/libjpeg.a -lm
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la'
/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la
/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la'
/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la
/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la'
/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la
/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la'
/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la
/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
/bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask'
cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask
/bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump'
cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump
/bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks'
cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks
/bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg'
cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg
cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/doc
cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/html
cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/share/python
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
if test -f /librx.a; then \
rm -rf rx.dir; mkdir rx.dir; \
echo 'rxdispencer routines being added to library'; \
cp /librx.a rx.dir; cd rx.dir; \
ar -x librx.a; cd ..; \
ar r libccif.a rx.dir/*.o; \
ranlib libccif.a; rm -rf rx.dir; \
fi
ld -fPIC -shared -soname libccif.so --whole-archive libccif.a -o libccif.so
cp -p `pwd`/libccif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
cp -p `pwd`/cif_mmdic.lib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/cif_mmdic.lib
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.a
if (test -f libccif.so); then \
cp -p `pwd`/libccif.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccif.so; \
fi
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
ld -shared -soname libmmdb.so --whole-archive -o libmmdb.so libmmdb.a; ld -shared -soname libccp4c.so --whole-archive -o libccp4c.so libccp4c.a; ld -shared -soname libccp4f.so --whole-archive -o libccp4f.so libccp4f.a
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4; fi
cp -p ccp4_file_err.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_file_err.h
cp -p ccp4_program.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_program.h
cp -p ccp4_unitcell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_unitcell.h
cp -p cmap_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_errno.h
cp -p cmap_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_stats.h
cp -p csymlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/csymlib.h
cp -p library_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_file.h
cp -p w32mvs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/w32mvs.h
cp -p ccp4_fortran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_fortran.h
cp -p ccp4_spg.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_spg.h
cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_utils.h
cp -p cmap_header.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_header.h
cp -p cmaplib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib.h
cp -p cvecmat.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cvecmat.h
cp -p mtzdata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/mtzdata.h
cp -p ccp4_array.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_array.h
cp -p ccp4_general.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_general.h
cp -p ccp4_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_sysdep.h
cp -p ccp4_vars.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_vars.h
cp -p cmap_labels.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_labels.h
cp -p cmaplib_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmaplib_f.h
cp -p overview.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/overview.h
cp -p ccp4_errno.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_errno.h
cp -p ccp4_parser.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_parser.h
cp -p ccp4_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/ccp4_types.h
cp -p cmap_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_data.h
cp -p cmap_skew.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmap_skew.h
cp -p cmtzlib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/cmtzlib.h
cp -p library_f.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ccp4/library_f.h
if test ! -d /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; then mkdir /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb; fi
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/bfgs_min.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/bfgs_min.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/math_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/math_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_bondmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_bondmngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cryst.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cryst.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_graph.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_graph.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_model.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_model.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_symop.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_utils.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/file_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/file_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mattype_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mattype_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_chain.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_chain.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_defs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_defs.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_manager.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_manager.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_rwbrook.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_rwbrook.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_tables.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_tables.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_xml.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_xml.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/linalg_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/linalg_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_align.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_align.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_cifdefs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_cifdefs.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_ficif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_ficif.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mask.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mask.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_title.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_title.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/random_n.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/random_n.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/machine_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/machine_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_atom.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_atom.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_coormngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_coormngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_file.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_file.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_mmcif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_mmcif.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_selmngr.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_selmngr.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_uddata.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_uddata.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/stream_.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/stream_.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/mmdb_sbase0.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/mmdb_sbase0.h
cp -p /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb/hybrid_36.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/mmdb/hybrid_36.h
cp -p `pwd`/./libmmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
cp -p `pwd`/./libccp4c.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
cp -p `pwd`/./libccp4f.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libmmdb.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4c.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/./libccp4f.a
cp -p `pwd`/libmmdb.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libmmdb.so; cp -p `pwd`/libccp4c.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4c.so; cp -p `pwd`/libccp4f.so /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libccp4f.so;
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF ".deps/ssm_superpose.Tpo" -c -o ssm_superpose.lo ssm_superpose.cpp; \
then mv -f ".deps/ssm_superpose.Tpo" ".deps/ssm_superpose.Plo"; else rm -f ".deps/ssm_superpose.Tpo"; exit 1; fi
mkdir .libs
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -fPIC -DPIC -o .libs/ssm_superpose.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_superpose.lo -MD -MP -MF .deps/ssm_superpose.Tpo -c ssm_superpose.cpp -o ssm_superpose.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF ".deps/ss_csia.Tpo" -c -o ss_csia.lo ss_csia.cpp; \
then mv -f ".deps/ss_csia.Tpo" ".deps/ss_csia.Plo"; else rm -f ".deps/ss_csia.Tpo"; exit 1; fi
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -fPIC -DPIC -o .libs/ss_csia.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_csia.lo -MD -MP -MF .deps/ss_csia.Tpo -c ss_csia.cpp -o ss_csia.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF ".deps/ss_vxedge.Tpo" -c -o ss_vxedge.lo ss_vxedge.cpp; \
then mv -f ".deps/ss_vxedge.Tpo" ".deps/ss_vxedge.Plo"; else rm -f ".deps/ss_vxedge.Tpo"; exit 1; fi
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -fPIC -DPIC -o .libs/ss_vxedge.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_vxedge.lo -MD -MP -MF .deps/ss_vxedge.Tpo -c ss_vxedge.cpp -o ss_vxedge.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF ".deps/ssm_align.Tpo" -c -o ssm_align.lo ssm_align.cpp; \
then mv -f ".deps/ssm_align.Tpo" ".deps/ssm_align.Plo"; else rm -f ".deps/ssm_align.Tpo"; exit 1; fi
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -fPIC -DPIC -o .libs/ssm_align.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ssm_align.lo -MD -MP -MF .deps/ssm_align.Tpo -c ssm_align.cpp -o ssm_align.o >/dev/null 2>&1
if /bin/sh ./libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF ".deps/ss_graph.Tpo" -c -o ss_graph.lo ss_graph.cpp; \
then mv -f ".deps/ss_graph.Tpo" ".deps/ss_graph.Plo"; else rm -f ".deps/ss_graph.Tpo"; exit 1; fi
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -fPIC -DPIC -o .libs/ss_graph.o
x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" "-DPACKAGE_STRING=\"ssm 1.0\"" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT ss_graph.lo -MD -MP -MF .deps/ss_graph.Tpo -c ss_graph.cpp -o ss_graph.o >/dev/null 2>&1
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -o libssm.la -rpath /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib ssm_superpose.lo ss_csia.lo ss_vxedge.lo ssm_align.lo ss_graph.lo -lm
x86_64-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtbeginS.o .libs/ssm_superpose.o .libs/ss_csia.o .libs/ss_vxedge.o .libs/ssm_align.o .libs/ss_graph.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.3/../../../../lib64/crtn.o -march=core2 -Wl,-soname -Wl,libssm.so.0 -o .libs/libssm.so.0.0.0
(cd .libs && rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0)
(cd .libs && rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so)
ar cru .libs/libssm.a ssm_superpose.o ss_csia.o ss_vxedge.o ssm_align.o ss_graph.o
ranlib .libs/libssm.a
creating libssm.la
(cd .libs && rm -f libssm.la && ln -s ../libssm.la libssm.la)
if x86_64-pc-linux-gnu-g++ -DPACKAGE_NAME=\"ssm\" -DPACKAGE_TARNAME=\"ssm\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"ssm\ 1.0\" -DPACKAGE_BUGREPORT=\"[log in to unmask]\" -DPACKAGE=\"ssm\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DSTDC_HEADERS=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_RINT=1 -DHAVE_SQRT=1 -DHAVE_LIBM=1 -I. -I. -I/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src/mmdb -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -MT superpose.o -MD -MP -MF ".deps/superpose.Tpo" -c -o superpose.o superpose.cpp; \
then mv -f ".deps/superpose.Tpo" ".deps/superpose.Po"; else rm -f ".deps/superpose.Tpo"; exit 1; fi
/bin/sh ./libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src -lmmdb -o superpose superpose.o libssm.la -lm
x86_64-pc-linux-gnu-g++ -O2 -march=core2 -pipe -fomit-frame-pointer -fPIC -o .libs/superpose superpose.o -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/src ./.libs/libssm.so -lmmdb -lm -Wl,--rpath -Wl,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
creating superpose
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la'
/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la
/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
/bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose'
cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm"
cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_graph.h'
cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_superpose.h'
cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_csia.h'
cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_vxedge.h'
cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_align.h'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
gfortran -O2 -march=core2 -pipe -fomit-frame-pointer -fno-second-underscore -fno-stack-protector -fPIC -o fontpack /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/fontpack.f -L../src -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lccp4f -lccp4c -lmmdb -L/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ccif -lccif -L/usr/lib64 -llapack -lstdc++ -Wl,-rpath,/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib -lm
rm -f font84.dat
test -f font84.ascii || ln -s /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data/font84.ascii .
./fontpack
cp `pwd`/font84.dat /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/font84.dat
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1'
if test -n "lib/clipper"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper; \
make -i -l 8 ; else true; fi ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
Making all in phs
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
Making all in contrib
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
Making all in cif
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
Making all in mmdb
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
Making all in mmdbold
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
Making all in minimol
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
Making all in ccp4
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
Making all in cns
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
Making all in core
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
Making install in phs
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-phs.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
/usr/bin/install -c .libs/libclipper-phs.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-phs.so.2.0.0 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.0 libclipper-phs.so; }; })
/usr/bin/install -c .libs/libclipper-phs.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.la
/usr/bin/install -c .libs/libclipper-phs.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-phs.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs
cp -p phs_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/phs/phs_io.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/phs'
Making install in contrib
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
/usr/bin/install -c .libs/libclipper-contrib.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-contrib.so.2.0.0 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.0 libclipper-contrib.so; }; })
/usr/bin/install -c .libs/libclipper-contrib.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.la
/usr/bin/install -c .libs/libclipper-contrib.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-contrib.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib
cp -p convolution_search.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/convolution_search.h
cp -p mapfilter.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/mapfilter.h
cp -p sfscale.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfscale.h
cp -p edcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/edcalc.h
cp -p originmatch.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/originmatch.h
cp -p sfweight.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfweight.h
cp -p fffear.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/fffear.h
cp -p sfcalc.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc.h
cp -p skeleton.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/skeleton.h
cp -p function_object_bases.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/function_object_bases.h
cp -p sfcalc_obs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/contrib/sfcalc_obs.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/contrib'
Making install in cif
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cif.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
/usr/bin/install -c .libs/libclipper-cif.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cif.so.2.0.0 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.0 libclipper-cif.so; }; })
/usr/bin/install -c .libs/libclipper-cif.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.la
/usr/bin/install -c .libs/libclipper-cif.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cif.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif
cp -p cif_data_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cif/cif_data_io.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cif'
Making install in mmdb
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdb.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
/usr/bin/install -c .libs/libclipper-mmdb.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdb.so.2.0.0 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.0 libclipper-mmdb.so; }; })
/usr/bin/install -c .libs/libclipper-mmdb.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.la
/usr/bin/install -c .libs/libclipper-mmdb.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdb.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb
cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdb/clipper_mmdb.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdb'
Making install in mmdbold
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-mmdbold.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
/usr/bin/install -c .libs/libclipper-mmdbold.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2 || { rm -f libclipper-mmdbold.so.2 && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so || { rm -f libclipper-mmdbold.so && ln -s libclipper-mmdbold.so.2.0.0 libclipper-mmdbold.so; }; })
/usr/bin/install -c .libs/libclipper-mmdbold.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.la
/usr/bin/install -c .libs/libclipper-mmdbold.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-mmdbold.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold
cp -p clipper_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb.h
cp -p clipper_mmdb_wrapper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_wrapper.h
cp -p clipper_mmdb_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/clipper_mmdb_types.h
cp -p container_mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/mmdbold/container_mmdb.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/mmdbold'
Making install in minimol
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-minimol.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
/usr/bin/install -c .libs/libclipper-minimol.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-minimol.so.2.0.0 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.0 libclipper-minimol.so; }; })
/usr/bin/install -c .libs/libclipper-minimol.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.la
/usr/bin/install -c .libs/libclipper-minimol.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-minimol.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol
cp -p container_minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/container_minimol.h
cp -p minimol_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_data.h
cp -p minimol_seq.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_seq.h
cp -p minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol.h
cp -p minimol_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_io.h
cp -p minimol_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimol/minimol_utils.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/minimol'
Making install in ccp4
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-ccp4.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
/usr/bin/install -c .libs/libclipper-ccp4.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-ccp4.so.2.0.0 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.0 libclipper-ccp4.so; }; })
/usr/bin/install -c .libs/libclipper-ccp4.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.la
/usr/bin/install -c .libs/libclipper-ccp4.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-ccp4.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4
cp -p ccp4_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_map_io.h
cp -p ccp4_mtz_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_io.h
cp -p ccp4_mtz_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_mtz_types.h
cp -p ccp4_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/ccp4/ccp4_utils.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/ccp4'
Making install in cns
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-cns.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
/usr/bin/install -c .libs/libclipper-cns.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so.0 || { rm -f libclipper-cns.so.0 && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-cns.so.0.0.0 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.0.0.0 libclipper-cns.so; }; })
/usr/bin/install -c .libs/libclipper-cns.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.la
/usr/bin/install -c .libs/libclipper-cns.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-cns.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns
cp -p cns_hkl_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_hkl_io.h
cp -p cns_map_io.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/cns/cns_map_io.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/cns'
Making install in core
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
/bin/sh ../../libtool --mode=install /usr/bin/install -c libclipper-core.la /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
/usr/bin/install -c .libs/libclipper-core.so.2.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.so.2.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.0 libclipper-core.so.2; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libclipper-core.so.2.0.0 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.0 libclipper-core.so; }; })
/usr/bin/install -c .libs/libclipper-core.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.la
/usr/bin/install -c .libs/libclipper-core.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libclipper-core.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ../../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core
cp -p atomsf.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/atomsf.h
cp -p container_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_types.h
cp -p nxmap_operator.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap_operator.h
cp -p cell.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/cell.h
cp -p coords.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/coords.h
cp -p ramachandran.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/ramachandran.h
cp -p clipper_instance.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_instance.h
cp -p derivs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/derivs.h
cp -p resol_basisfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_basisfn.h
cp -p clipper_memory.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_memory.h
cp -p fftmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap.h
cp -p resol_fn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_fn.h
cp -p clipper_message.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_message.h
cp -p fftmap_sparse.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/fftmap_sparse.h
cp -p resol_targetfn.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/resol_targetfn.h
cp -p clipper_precision.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_precision.h
cp -p hkl_compute.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_compute.h
cp -p rotation.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/rotation.h
cp -p clipper_stats.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_stats.h
cp -p hkl_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_data.h
cp -p spacegroup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup.h
cp -p clipper_sysdep.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_sysdep.h
cp -p hkl_datatypes.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_datatypes.h
cp -p spacegroup_data.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/spacegroup_data.h
cp -p clipper_test.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_test.h
cp -p hkl_info.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_info.h
cp -p symop.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/symop.h
cp -p clipper_types.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_types.h
cp -p hkl_lookup.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_lookup.h
cp -p clipper_util.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/clipper_util.h
cp -p hkl_operators.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/hkl_operators.h
cp -p container.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container.h
cp -p map_interp.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_interp.h
cp -p xmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/xmap.h
cp -p container_hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_hkl.h
cp -p map_utils.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/map_utils.h
cp -p container_map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/container_map.h
cp -p nxmap.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/core/nxmap.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper/core'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[3]: Nothing to be done for `install-exec-am'.
/bin/sh ../mkinstalldirs /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper
cp -p clipper-ccp4.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-ccp4.h
cp -p clipper-contrib.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-contrib.h
cp -p clipper-phs.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-phs.h
cp -p clipper-cctbx.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cctbx.h
cp -p clipper-minimol.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-minimol.h
cp -p clipper.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper.h
cp -p clipper-cif.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cif.h
cp -p clipper-mmdb.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdb.h
cp -p minimal-clipper-hkl.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-hkl.h
cp -p clipper-cns.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-cns.h
cp -p clipper-mmdbold.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/clipper-mmdbold.h
cp -p minimal-clipper-map.h /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/clipper/minimal-clipper-map.h
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/clipper/clipper'
if test -n "lib/ssm"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm; \
make -i -l 8 ; else true; fi ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libssm.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la'
/usr/bin/install -c .libs/libssm.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so.0 || { rm -f libssm.so.0 && ln -s libssm.so.0.0.0 libssm.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libssm.so.0.0.0 libssm.so || { rm -f libssm.so && ln -s libssm.so.0.0.0 libssm.so; }; })
/usr/bin/install -c .libs/libssm.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.la
/usr/bin/install -c .libs/libssm.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libssm.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
/bin/sh ./libtool --mode=install cp -p 'superpose' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose'
cp -p .libs/superpose /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/superpose
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm" || mkdir -p -- "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm"
cp -p 'ss_graph.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_graph.h'
cp -p 'ssm_superpose.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_superpose.h'
cp -p 'ss_csia.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_csia.h'
cp -p 'ss_vxedge.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ss_vxedge.h'
cp -p 'ssm_align.h' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/include/ssm/ssm_align.h'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/ssm'
if test -n "lib/DiffractionImage"; then cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage; \
make -i -l 8 ; else true; fi ; \
make install
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making all in CBFlib
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making all in src
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
Making all in Bruker
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
Making all in MAR
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
Making all in Rigaku
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
Making all in jpg
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making install in CBFlib
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
Making install in src
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib/src'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[5]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[5]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/CBFlib'
Making install in Bruker
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Bruker'
Making install in MAR
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/MAR'
Making install in Rigaku
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/Rigaku'
Making install in jpg
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[4]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[4]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage/jpg'
make[2]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[3]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib"
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la'
/usr/bin/install -c .libs/libDiffImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.la
/usr/bin/install -c .libs/libDiffImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'lib_DiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la'
/usr/bin/install -c .libs/lib_DiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0 || { rm -f lib_DiffractionImage.so.0 && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so || { rm -f lib_DiffractionImage.so && ln -s lib_DiffractionImage.so.0.0.0 lib_DiffractionImage.so; }; })
/usr/bin/install -c .libs/lib_DiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.la
/usr/bin/install -c .libs/lib_DiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/lib_DiffractionImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImage.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la'
/usr/bin/install -c .libs/libDiffractionImage.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so.0 || { rm -f libDiffractionImage.so.0 && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImage.so.0.0.0 libDiffractionImage.so || { rm -f libDiffractionImage.so && ln -s libDiffractionImage.so.0.0.0 libDiffractionImage.so; }; })
/usr/bin/install -c .libs/libDiffractionImage.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.la
/usr/bin/install -c .libs/libDiffractionImage.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImage.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libDiffractionImaJ.la' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la'
/usr/bin/install -c .libs/libDiffractionImaJ.so.0.0.0 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.so.0.0.0
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0 || { rm -f libDiffractionImaJ.so.0 && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so.0; }; })
(cd /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib && { ln -s -f libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so || { rm -f libDiffractionImaJ.so && ln -s libDiffractionImaJ.so.0.0.0 libDiffractionImaJ.so; }; })
/usr/bin/install -c .libs/libDiffractionImaJ.lai /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.la
/usr/bin/install -c .libs/libDiffractionImaJ.a /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
chmod 644 /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
ranlib /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/libDiffractionImaJ.a
PATH="$PATH:/sbin" ldconfig -n /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,--rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin" || /bin/mkdir -p "/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin"
/bin/sh ./libtool --mode=install cp -p 'automask' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask'
cp -p automask /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/automask
/bin/sh ./libtool --mode=install cp -p 'diffdump' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump'
cp -p diffdump /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diffdump
/bin/sh ./libtool --mode=install cp -p 'printpeaks' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks'
cp -p printpeaks /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/printpeaks
/bin/sh ./libtool --mode=install cp -p 'diff2jpeg' '/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg'
cp -p diff2jpeg /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/bin/diff2jpeg
cp -p doc/DiffractionImage.doc /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/doc
cp -p doc/DiffractionImage.html /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/html
cp -p *.py /var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/share/python
make[3]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[2]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/DiffractionImage'
cd lib/data; make -l 8
make[1]: Entering directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/var/tmp/portage/sci-libs/ccp4-libs-6.1.1/work/ccp4-6.1.1/lib/data'
>>> Source compiled.
|
