Dear Matthew,
thanks again for your time.
I uploaded the directory and got the number 251845.
I also included the raw data in the directory.
By the way - we are still working on 32-bit architecture (and no chance to change that soon),
nevertheless it worked before ;).
Many regards,
Mareike
Matthew Webster wrote:
> Hi,
> FSL4.1.2 does make additional fslstats calls, but I'm surprised it
> still crashes on the 4GB machine. Can you tar up the feat directory and
> upload it to:
>
> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>
> and let us know the 6-digit reference number?
>
> Many Regards
>
> Matthew
>
>> Dear FSL Team,
>>
>> We recently updated FSL from 4.0 to 4.12.
>> Ever since feat crashes during preprocessing with
>> Image Exception : #99 :: Out of memory
>> terminate called after throwing an instance of
>> 'RBD_COMMON::BaseException'
>> after /common/apps/fsl-412/bin/fslstats prefiltered_func_data_st -k
>> mask -p 50.
>>
>> This happens with exactly the same data I evaluated before, with the
>> same parameters - I only reopened the *fsf - files and resaved them
>> under Feat from FSL 4.12 (and changed location of MNI_152 etc.). I
>> also use identical hardware (identical machine, maybe a few updates)
>> which worked well before (in December). The memory load sums up to
>> about 90% (1GB RAW) and then the process crashes. Interestingly, this
>> happened also with 4GB RAM, when I testes different hardware.
>>
>> To us this looks like a strange memory conflict (maybe connected to
>> our configurations) and now we wonder if you changed anything in
>> memory handling between version 4.0 and version 4.1?
>>
>> Thanks for your help and greetings from Hamburg,
>> Mareike
>>
>>
>>
>>
>> --
>> Mareike Menz
>> NeuroImage Nord Lübeck
>> University Medical Center Hamburg-Eppendorf, Bldg. S10
>> Martinistr. 52
>> 20246 Hamburg
>> Germany
>> +49 40 7410 53683
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>> Dr. Alexander Kirstein
>> Ricarda Klein
>> Prof. Dr. Dr. Uwe Koch-Gromus
>
>
--
Mareike Menz
NeuroImage Nord Lübeck
University Medical Center Hamburg-Eppendorf, Bldg. S10
Martinistr. 52
20246 Hamburg
Germany
+49 40 7410 53683
[log in to unmask]
-------------------------
() ascii ribbon campaign
/\ - against html mail
--
Pflichtangaben gemäß Gesetz über elektronische Handelsregister und Genossenschaftsregister sowie das Unternehmensregister (EHUG):
Universitätsklinikum Hamburg-Eppendorf
Körperschaft des öffentlichen Rechts
Gerichtsstand: Hamburg
Vorstandsmitglieder:
Prof. Dr. Jörg F. Debatin (Vorsitzender)
Dr. Alexander Kirstein
Ricarda Klein
Prof. Dr. Dr. Uwe Koch-Gromus
|