I'm currently running version 1.0, but using the format converter to
generate the NmrStar file was exactly what I was trying to do.
Nick Anthis
Mobile: +44 (0) 7769 710 914
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-----Original Message-----
From: CcpNmr software mailing list [mailto:[log in to unmask]] On Behalf
Of Chris Penkett
Sent: 03 February 2009 13:47
To: [log in to unmask]
Subject: Re: resonance assignment list
Hi Nick,
Which version of analysis are you using? We have some new software for
getting CCPN projects (v2) into BMRB (NMR-STAR) format. You can convert
it into Analysis v2 projects if you are using an old version of analysis
here:
http://www.bio.cam.ac.uk/ccpn/upgrade/
With a v2 project, we can create a BMRB file for you using beta-test
software. This software will be available to everyone very soon (and is
already there if you have the very latest API).
If you have a structure, then you can deposit the file at the EBI and the
BMRB file will be automatically created for you (once the data has been
curated) - again this is beta-test software at the moment.
I'll write an announcement about the EBI AutoDep software soon as we are
looking for testers and are *very* keen for people to test it. Once it is
tested properly, we hope it will save depositors a lot of time and effort
in the future both for submitting structure and chemical shift data.
Chris
> Should be able to produce what you need by:
>
> formatConverter->Process->Write BMRB..... followed by Export->NmrStar etc.
>
> If you fill in all your spectrometer info etc. (or have already done so)
> then these should get into the NmrStar file and save a load of faff with
> the ADIT interface.
>
> I don't know if Chris P's AutoDep server at EBI is designed to handle
> shift deposition in the absence of structures - Chris?
>
> http://www.ebi.ac.uk/msd-srv/autodep4/index2.jsp
>
>
> On Tue, 3 Feb 2009, Nick Anthis wrote:
>
>> I'm having difficulty figuring out how to save or export a resonance
>> list
>> from Analysis in a text file format (i.e. for submission to the BMRB).
>> Thanks in advance for pointing me in the right direction.
>>
>
> Dr. Brian O. Smith ---------------------- B Smith at bio gla ac uk
> Division of Molecular & Cellular Biology,
> Faculty of Biomedical & Life Sciences,
> Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, UK.
> Tel: 0141 330 5167/6459/3089 Fax: 0141 330 4600
> -------------------------------------------------------------------
> The University of Glasgow, charity number SC004401
>
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