Dear Neil, All,
just to add one more facet :)
> 3) Coregister mean T2 to bias-corrected, skull-stripped T1 and select remaining
> T2 images as 'Other Images'
> 4) Coreg mean T2 (+others) to skull stripped T1
Another option is to coregister the (mean) EPI to the native-space GM,
as this is quite effectively skull-stripped. Works for me, and no need
for another software. Incidentally, I do it the other way around so as
not to move the functionals around (and then normalize the GM to a GM
template), but that is a minor point.
Marko Wilke (Dr.med./M.D.)
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Universitäts-Kinderklinik University Children's Hospital
Abt. III (Neuropädiatrie) Dept. III (Pediatric neurology)
Hoppe-Seyler-Str. 1, D - 72076 Tübingen
Tel.: (+49) 07071 29-83416 Fax: (+49) 07071 29-5473