Hi Tassos,
I very much like Homolmapper:
http://www.mcb.ucdavis.edu/faculty-labs/lagarias/homolmapper_home/homolmapper%20web%20page.htm
You can map several conserved properties onto your structures, not
just plain sequence.
Best,
Miguel
Le 29 janv. 09 à 22:25, Anastassis Perrakis a écrit :
> Dear all,
>
> I was wondering what is the state of the art for this old dark
> art ... are there any good servers / programs that allow to easily
> upload your own sequence alignments or create a 'transparent'
> alignment (I want to see the alignment first and not a total black
> box) and then allow you to write out sequence conservation based
> either on identity or in e.g a Dayhoff matrix on the B factor column
> for displaying it later in eg Pymol?
>
> To be clear I do not want a structural alignment, but mapping
> sequence alignment of eg a family to a single structure of a family
> member.
>
> Thanks in advance, Tassos
>
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Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
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France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
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Web: http://www.pangea.org/mol/spip.php?rubrique2
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