Why not use the already skull stripped version distributed with FSL (with
the _brain suffix?
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of Cherif Sahyoun
Sent: Wednesday, December 24, 2008 12:00 PM
To: [log in to unmask]
Subject: Re: [FSL] MNI152 skull strip
Hey J,
Use a different threshold for stripping. 0.3 is usually where I start
when I lose part of the frontal lobe, but do play around.
C.
----------------------------------------------------------------------------
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Cherif P. Sahyoun HST-MEMP
Developmental Neuroimaging of Cognitive Functions
C: 617 688 8048
H: 617 424 6956
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"Live as if this were your last day. Learn as if you'll live forever"
Gandhi
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On Wed, Dec 24, 2008 at 5:56 PM, Jeremy Young
<[log in to unmask]> wrote:
> Hello,
>
> I am using BET to skull strip MNI152, but it seems to be taking too much
> at the superior border of the brain. This is apparent in the axial slices.
> I'm using the -R option, but it doesn't seem to be any better.
>
> Is there anything else I can do to make this better?
>
> Thanks!
> Jeremy
>
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