Hi,
If you are still having problems with the alternative_mask
option, you can upload the design.fsf and resulting FEAT directory to
www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
let us know the 6-digit reference number and we would be able to check
what's going wrong in the analysis.
Many Regards
Matthew
> Hi Wolf,
>
> I always run things from the command line but never managed to get
> it to go
> this far. Which version of fSL are you using? I have the latest
> version
> installed on my machine.
>
> Perhaps I misinterpreted what the alternative mask option does, but
> it would
> seem from the log info you sent that it merely masks the filtered
> data, then
> uses regular thresholding (consistent with BET being turned off) to
> generate
> a mask anyway. I thought that what one enters as an alternative mask
> is the
> actual mask used for the main stats but the info you sent does not
> seem to
> support that.
>
> Thanks
> Marios
>
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