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CCP4BB  November 2008

CCP4BB November 2008

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Subject:

Re: iMosflm 1.0.0

From:

Luke Kontogiannis <[log in to unmask]>

Reply-To:

[log in to unmask]

Date:

Tue, 18 Nov 2008 09:03:06 -0000

Content-Type:

text/plain

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Parts/Attachments

text/plain (86 lines)

Hi Jan,

Thanks for the message

- At the moment there is the imosflm tutorial on website under Documentation
http://www.mrc-lmb.cam.ac.uk/harry/imosflm/
- There is no equivalent of the old mosflm parameter file ... yet.
- When loading images imosflm loads all the images with the same template.
However, if you then want to add more images to the same sector it only
adds a single image at a time. This is a limitation that I will have to
get around in a future release.

I'm working towards the next release which will see your points addressed.
We'll keep improving imosflm according to the suggestions of users so keep
them coming

Luke


> Hi Luke,
> the new imosflm is really wonderful with its easy access to mosflm,
> its plenty graphic diagnostics and the quick pointless/scala access.
>
> A couple of questions that came up using it during data collection:
>
> - Is there any imosflm-specific documentation?
> - Is there a possibility to read in a parameter file? During data
> collection it is very convenient with good ol' mosflm to have a
> parameter file in which one only has to change eg. dcb16-5 to dcb16-6
> and everything else is set up, rather than clicking through the file
> tree to find the images. Also, some beamlines notoriously have a
> slightly off beam centre in the file header which can be addressed
> with such a parameter file, or the default gain might be off a bit...
> - Is there a simple way to add images? Eg. when one has fired up
> imosflm 10 images have been collected, if I then want to refine cell
> parameters with two wedges 90 deg apart and want to integrate the
> full data set. At this point it seems that I can only add one image
> at a time.
>
> Thanks a lot for any pointers
> Cheers
> Jan
>
>
> On Nov 13, 2008, at 9:18 AM, Luke Kontogiannis wrote:
>
>> Dear all,
>>
>> When we released iMosflm 1.0.0 on 17th October 2008, I accidentally
>> uploaded a zip archive with an old version of the imosflm source
>> code for Windows. If you downloaded the iMosflm for Windows zip
>> archive between 17 October and 13 November 2008, you are running
>> iMosflm 1.0.0 gc (gold candidate). You can see which version you
>> are running by clicking on the Help menu and selecting "About iMosflm"
>>
>> In iMosflm 1.0.0 gc the QuickSymm and QuickScale buttons do not
>> work properly and the mtz files are placed in the mosdir directory
>> in the imosflm root directory
>>
>> If you download imosflm.zip from 13 November 2008 onwards, you will
>> be running iMosflm 1.0.0, 13th November 2008. The output mtz files
>> will be saved in the mosdir directory under your home folder e.g
>> "C:/Documents and Settings/Luke Kontogiannis/mosdir" and the
>> instructions on the Windows section of the imosflm website on how
>> to get Baubles to work should get you up and running.
>>
>> Unix/Linux/Mac OS X users are unaffected.
>>
>> Thanks to the CCP4 team for pointing this out and apologies to all
>> Windows users.
>>
>> Luke
>> http://www.mrc-lmb.cam.ac.uk/harry/imosflm/
>
> --
> Jan Abendroth
> deCODE biostructures
> Seattle / Bainbridge Island WA, USA
> work: JAbendroth_at_decode.is
> home: Jan.Abendroth_at_gmail.com
>
>
>
>
>

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