Hi - yes, 4.1 does create correct headers in its output. If you have
old files without this you can easily copy this into them with
fslcpgeom $FSLDIR/data/standard/MNI152_T1_2mm <yourfile> -d
Cheers.
On 24 Nov 2008, at 17:14, Colm G. Connolly wrote:
> Hi everybody,
>
> I have the results of a VBM analysis performed in FSL 4.0 and have
> been looking at he GM_mod_merg files. I've noticed that they have no
> qform/sform set in them. I presume that the files are in MNI space
> so my question is can I just copy the geometry info into (a copy of
> the) GM_mod_merg files from one of the MNI atlas files so that they
> will have the correct orientation information stored in them. Is
> anything bad likely to happen if I do this?
>
> I've yet to repeat this analysis in FSL 4.1, so I don't know wether
> FSL 4.1 will write GM_mod_merg files with the appropriate sform/
> qform. Can someone please tell me if it does?
>
> Thanks in advance,
>
> Regards,
> --
> Dr Colm G. Connolly
> School of Psychology and Institute of Neuroscience
> The Lloyd Building
> University of Dublin
> Trinity College, Dublin 2, Éire
> Fax: +353-1-671-3183
>
> Please note that electronic mail to, from or within the Trinity
> College Dublin, may be the
> subject of a request under the Freedom of Information Act.
>
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Stephen M. Smith, Professor of Biomedical Engineering
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FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
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