It looks similar for me and everything has been working fine. (-n 1000 -n 50 appears in
*.generate for a 1000 permutation run that was split up into 20 50 permutation segments)
John Colby
MD/PhD student
Developmental Cognitive Neuroimaging Lab
David Geffen School of Medicine at UCLA
On Tue, 4 Nov 2008 16:19:24 -0800, Jason Stein <[log in to unmask]> wrote:
>Hello,
>
>I am trying to use randomise_parallel, and I see that in the *.generate
>file, we get:
>
>sleep 15 ; /usr/local/fsl-4.1.0-1_64bit/bin/randomise -i
>[...dir...]/allfiles.nii.gz -o [...dir...] -d
>[...dir...]/allfiles.nii.gz.mat -t [...dir...]/allfiles.nii.gz.con -m
>[...dir...]/mask.nii.gz -T -n 10000 -n 333 -o [...dir...]/CvH_3DMI_SEED3
>--seed=3
>The question I have is why are there two -n options? Is this ok? We
>initally specified 10000 permutations, and 333 of those permutations are
>being run on this node?
>
>Thanks for any help,
>Jason
>
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