Hi. Thanks for your help with this.
When I run probtrackx with no targets or waypoints, I get the files core, fdt.log,
fdt_seed_classification.txt, probtrackx.log, targets.txt and waypoints.txt. I do not get an
fdt_paths output file.
The command I'm using:
probtrackx --mode=seedmask -x P206_dti_FA_orig_ROI_FA_UHDRS_mask_cc.nii.gz -l -c 0.2
-S 2000 --steplength=0.5 -P 5000 --forcedir --opd -s Bedpost.bedpostX/merged -m
Bedpost.bedpostX/nodif_brain_mask --dir=P206/track/UHDRS/Left --
waypoints=/P206/track/UHDRS/Left/waypoints.txt --
targetmasks=P206/track/UHDRS/Left/targets.txt --os2t
Thanks
India
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