Dan,
Would this be related to having different pythons installed? Fink
doesn't remove the old python versions (as far as I can tell). Maybe
removing python24 and pythons 25 will help? I will send off the
environment files ASAP.
J
On Nov 5, 2008, at 2:47 PM, Daniel O'Donovan wrote:
> Hi All,
>
> I've been using 2.6 for some time and I haven't had too many
> problems. There is a patch that you need to apply (I've hopefully
> attached it) to get Tkinter working, this has been fixed in later
> 2.6 releases but my patch wasn't accepted for the first 2.6
> release! :-( The win32 release is built on 2.6 and seems to work fine.
>
> Unfortunately your problem isn't related to the patch issue. It
> looks like your libpython2.6.so isn't getting picked up - in you
> can, have a look at environment.txt and make sure that the your
> PYTHON_DIR and PYTHON_LIB are set correctly. I use
>
> PYTHON_LIB = -L/usr/local/lib/python2.6/config -lpython2.6
>
> and I would imagine that yours should be
>
> PYTHON_LIB = -L/sw/lib/python2.6/config -lpython2.6
>
> and then as Wayne says, either run the script again or try a 'make
> clean && make && make links'
>
> Oh yeah, patch! To apply, find yout Tkinter.py file - it should be in
>
> /sw/lib/python2.5/lib-tk/Tkinter.py
>
> cd into there
>
> $ cd /sw/lib/python2.5/lib-tk/Tkinter.py
>
> and apply the patch
>
> $ patch < broken2.6_tkinter_patch.diff
>
> <broken2.6_tkinter_patch.diff>
>
>
> I've just seen your next mail. Again, it looks like the wrong python
> libraries are some how being picked up. Would it be possible for you
> to email one of us the relevant (PYTHON) parts of your
> environment.txt file so we can have a look to see what's going on?
>
> Thanks,
>
> Dan
>
>
> On 5 Nov 2008, at 21:25, Wayne Boucher wrote:
>
>> I just downloaded and checked the 2.6 source code and the first
>> couple of
>> functions that it's complaining about still exist. It looks like you
>> might have tried to run the installation script on an existing < 2.6
>> compiled version?? If so then do
>>
>> cd ccpnmr2.0/c
>> make clean
>> cd ../..
>>
>> and then run the installation script again.
>>
>> Note that there are 2.6 compatibility issues that Dan discovered
>> (because
>> he downloaded 2.6 awhile ago). I forget if they have all been
>> sorted out
>> in the Analysis code that is released. (The one problem I remember
>> is
>> that the variable name "as", e.g. short-hand for atomSet, is no
>> longer
>> allowed in 2.6 because it's now a Python keyword.)
>>
>> Wayne
>>
>> On Wed, 5 Nov 2008, Johnny Croy wrote:
>>
>>> Wayne,
>>>
>>> Okay, things seem to be really screwed up. I updated my fink
>>> environment and with it came python 2.6. Now when I try and
>>> recompile
>>> analysis, I get the following error.
>>>
>>> Messages will be logged in "log_Analysis_2.txt"
>>> Assuming your platform is darwin
>>> Found X11 include match: /usr/X11R6/include/X11/Xlib.h
>>> Found X11 lib match: /usr/X11R6/lib/libX11.6.2.0.dylib
>>> Need to know where X11 directory is, in order to compile Analysis
>>> This directory should contain [include/*/X11/Xlib.h, lib*/*/
>>> libX11.*],
>>> and as seen, /usr/X11R6 does
>>> Guess X11 dir = "/usr/X11R6", is this correct (y or n)? y
>>> CCPN Tcl gzipped tar file not found, assuming using existing Tcl
>>> Found Tcl include match: /sw/include/tcl.h
>>> Found Tcl lib match: /sw/lib/tclConfig.sh
>>> Need to know where Tcl directory is, in order to compile Analysis
>>> This directory should contain [include/*/tcl.h, lib*/*/
>>> tclConfig.sh],
>>> and as seen, /sw does
>>> Guess Tcl dir = "/sw", is this correct (y or n)? y
>>> Guess Tcl version = 8.4 (by looking), is this ok (y or n) (reply y
>>> unless sure otherwise)? y
>>> CCPN Tk gzipped tar file not found, assuming using existing Tk
>>> Found Tk include match: /sw/include/tk.h
>>> Found Tk lib match: /sw/lib/tkConfig.sh
>>> Need to know where Tk directory is, in order to compile Analysis
>>> This directory should contain [include/*/tk.h, lib*/*/tkConfig.sh],
>>> and as seen, /sw does
>>> Guess Tk dir = "/sw", is this correct (y or n)? y
>>> Assuming Tk version is also 8.4
>>> CCPN Python gzipped tar file not found, assuming using existing
>>> Python
>>> Found Python include match: /sw/include/python2.5
>>> Found Python lib match: /sw/lib/python2.5
>>> Need to know where Python directory is, in order to compile Analysis
>>> This directory should contain [include/*/python2.*, lib*/*/
>>> python2.*],
>>> and as seen, /sw does
>>> Guess Python dir = "/sw", is this correct (y or n)? y
>>> Guess Python version = 2.6 (by looking), is this ok (y or n)
>>> (reply y
>>> unless sure otherwise)? y
>>> Do you want OpenGL used in Analysis (y or n) (n means only get
>>> Tk)? n
>>> Compile and install Analysis code (y or n)? y
>>> You can create environment file from scratch (this does not copy it
>>> from environment_default.txt)
>>> If you have already created it and edited it by hand you probably do
>>> not want to create it again here.
>>> Create environment file (y or n) (answer y unless you know
>>> otherwise)? y
>>> Use -fPIC compiler flag (y or n) (if gcc compiler y, otherwise n;
>>> answer y unless you know otherwise)? y
>>> Backing up ccpnmr2.0/c/environment.txt to ccpnmr2.0/c/
>>> environment.bak
>>> cd memops/global; make
>>> cc -L/sw/lib -bundle -bundle_loader /sw/bin/python2.6 -o
>>> BlockFile.so
>>> utility.o python_util.o hash_list.o hash_table.o mem_cache.o mutex.o
>>> py_mem_cache.o block_file.o shape_file.o int_array.o py_block_file.o
>>> py_shape_file.o
>>> Undefined symbols:
>>> "_PyTuple_Size", referenced from:
>>> _get_python_list_size in python_util.o
>>> _get_python_int_array in python_util.o
>>> _get_python_int_alloc_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_float_alloc_matrix in python_util.o
>>> _get_python_float_alloc_cube in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> _get_python_double_alloc_matrix in python_util.o
>>> _set_python_float_matrix in python_util.o
>>> _set_python_double_matrix in python_util.o
>>> _set_python_float_cube in python_util.o
>>> "_PyList_New", referenced from:
>>> _get_python_int_list in python_util.o
>>> _get_python_float_list in python_util.o
>>> _get_python_double_list in python_util.o
>>> _get_python_float_matrix in python_util.o
>>> _get_python_float_matrix in python_util.o
>>> _create_python_float_array in python_util.o
>>> "_PyFloat_Type", referenced from:
>>> _PyFloat_Type$non_lazy_ptr in python_util.o
>>> "_PyModule_GetDict", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _initBlockFile in py_block_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_PyInt_FromLong", referenced from:
>>> _get_python_int_list in python_util.o
>>> "_PyInt_AsLong", referenced from:
>>> _get_python_int_array in python_util.o
>>> _get_python_int_alloc_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> "_PyErr_Occurred", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _initBlockFile in py_block_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_PyList_GetItem", referenced from:
>>> _get_python_object_by_index in python_util.o
>>> _get_python_int_array in python_util.o
>>> _get_python_int_alloc_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_float_alloc_matrix in python_util.o
>>> _get_python_float_alloc_cube in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> _get_python_double_alloc_matrix in python_util.o
>>> _set_python_float_matrix in python_util.o
>>> _set_python_double_matrix in python_util.o
>>> _set_python_float_cube in python_util.o
>>> "_PyList_SetItem", referenced from:
>>> _get_python_int_list in python_util.o
>>> _get_python_float_list in python_util.o
>>> _get_python_double_list in python_util.o
>>> _get_python_float_matrix in python_util.o
>>> _get_python_float_matrix in python_util.o
>>> _set_python_float_array in python_util.o
>>> _set_python_double_array in python_util.o
>>> "_PyFloat_AsDouble", referenced from:
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> "__Py_NoneStruct", referenced from:
>>> __Py_NoneStruct$non_lazy_ptr in py_mem_cache.o
>>> __Py_NoneStruct$non_lazy_ptr in py_block_file.o
>>> __Py_NoneStruct$non_lazy_ptr in py_shape_file.o
>>> "_PyObject_Init", referenced from:
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> "_PyType_IsSubtype", referenced from:
>>> _get_python_float_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> "_Py_BuildValue", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _havePeak in py_block_file.o
>>> _maxValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _getValue in py_block_file.o
>>> _getPointValue in py_block_file.o
>>> _getattr_py_block_file in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _initBlockFile in py_block_file.o
>>> _getattr_py_shape_file in py_shape_file.o
>>> _getattr_py_shape_file in py_shape_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_Py_FatalError", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _initBlockFile in py_block_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_PyTuple_GetItem", referenced from:
>>> _get_python_object_by_index in python_util.o
>>> _get_python_int_array in python_util.o
>>> _get_python_int_alloc_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_float_alloc_matrix in python_util.o
>>> _get_python_float_alloc_cube in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> _get_python_double_alloc_matrix in python_util.o
>>> _set_python_float_matrix in python_util.o
>>> _set_python_double_matrix in python_util.o
>>> _set_python_float_cube in python_util.o
>>> "_PyObject_Free", referenced from:
>>> _delete_py_mem_cache in py_mem_cache.o
>>> _delete_py_block_file in py_block_file.o
>>> _delete_py_shape_file in py_shape_file.o
>>> "_PyList_Size", referenced from:
>>> _get_python_list_size in python_util.o
>>> _get_python_int_array in python_util.o
>>> _get_python_int_alloc_array in python_util.o
>>> _get_python_float_array in python_util.o
>>> _get_python_float_alloc_array in python_util.o
>>> _get_python_float_alloc_matrix in python_util.o
>>> _get_python_float_alloc_cube in python_util.o
>>> _get_python_double_array in python_util.o
>>> _get_python_double_alloc_array in python_util.o
>>> _get_python_double_alloc_matrix in python_util.o
>>> _set_python_float_array in python_util.o
>>> _set_python_double_array in python_util.o
>>> _set_python_float_matrix in python_util.o
>>> _set_python_double_matrix in python_util.o
>>> _set_python_float_cube in python_util.o
>>> "_PyType_Type", referenced from:
>>> _Mem_cache_type in py_mem_cache.o
>>> _Shape_block_file_type in py_block_file.o
>>> _Block_file_type in py_block_file.o
>>> _Shape_file_type in py_shape_file.o
>>> "_PyFloat_FromDouble", referenced from:
>>> _get_python_float_list in python_util.o
>>> _get_python_double_list in python_util.o
>>> _get_python_float_matrix in python_util.o
>>> _set_python_float_array in python_util.o
>>> _set_python_double_array in python_util.o
>>> "_PyArg_ParseTuple", referenced from:
>>> _resize in py_mem_cache.o
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _maxValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _getValue in py_block_file.o
>>> _getPointValue in py_block_file.o
>>> _getValues in py_block_file.o
>>> _setValue in py_block_file.o
>>> _setValues in py_block_file.o
>>> _save in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _setComponentAmplitude in py_shape_file.o
>>> _setShapeData in py_shape_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> "_PyDict_SetItemString", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _initBlockFile in py_block_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_Py_FindMethod", referenced from:
>>> _getattr_py_mem_cache in py_mem_cache.o
>>> _getattr_py_block_file in py_block_file.o
>>> _getattr_py_shape_file in py_shape_file.o
>>> "_PyErr_SetString", referenced from:
>>> _resize in py_mem_cache.o
>>> _resize in py_mem_cache.o
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _openFile in py_block_file.o
>>> _havePeak in py_block_file.o
>>> _havePeak in py_block_file.o
>>> _havePeak in py_block_file.o
>>> _havePeak in py_block_file.o
>>> _maxValue in py_block_file.o
>>> _maxValue in py_block_file.o
>>> _maxValue in py_block_file.o
>>> _maxValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _minValue in py_block_file.o
>>> _getValue in py_block_file.o
>>> _getValue in py_block_file.o
>>> _getValue in py_block_file.o
>>> _getPointValue in py_block_file.o
>>> _getPointValue in py_block_file.o
>>> _getPointValue in py_block_file.o
>>> _getValues in py_block_file.o
>>> _getValues in py_block_file.o
>>> _getValues in py_block_file.o
>>> _getValues in py_block_file.o
>>> _getValues in py_block_file.o
>>> _setValue in py_block_file.o
>>> _setValue in py_block_file.o
>>> _setValue in py_block_file.o
>>> _setValues in py_block_file.o
>>> _setValues in py_block_file.o
>>> _setValues in py_block_file.o
>>> _setValues in py_block_file.o
>>> _setValues in py_block_file.o
>>> _save in py_block_file.o
>>> _save in py_block_file.o
>>> _check in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _planeProduct in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _compareSlices in py_block_file.o
>>> _setComponentAmplitude in py_shape_file.o
>>> _setComponentAmplitude in py_shape_file.o
>>> _setShapeData in py_shape_file.o
>>> _setShapeData in py_shape_file.o
>>> _setShapeData in py_shape_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> "_Py_InitModule4", referenced from:
>>> _initMemCache in py_mem_cache.o
>>> _initBlockFile in py_block_file.o
>>> _initShapeFile in py_shape_file.o
>>> "_PyObject_Malloc", referenced from:
>>> _init_Py_Mem_cache in py_mem_cache.o
>>> _init_Py_Block_file in py_block_file.o
>>> _init_Py_Shape_block_file in py_block_file.o
>>> _init_Py_Shape_file in py_shape_file.o
>>> "_PyArg_ParseTupleAndKeywords", referenced from:
>>> _havePeak in py_block_file.o
>>> ld: symbol(s) not found
>>> collect2: ld returned 1 exit status
>>> make[1]: *** [BlockFile.so] Error 1
>>> make: *** [global] Error 2
>>> Uncommenting future import in Converters.py
>>> Uncommenting future import in part2/Converters2.py
>>>
>>>
>>> Any ideas.
>>>
>>> J
>>> On Nov 5, 2008, at 11:13 AM, Wayne Boucher wrote:
>>>
>>>> Right, it turns out the string wasn't "" but " " so I needed to add
>>>> something extra to strip the string before it is checked. So that
>>>> should
>>>> work now (it opened your project ok here, anyway). (With the
>>>> latest
>>>> update.)
>>>>
>>>> Wayne
>>>>
>>>> On Wed, 5 Nov 2008, Johnny Croy wrote:
>>>>
>>>>> Wayne,
>>>>>
>>>>> Here's a bit more information on what I did to screw things up. I
>>>>> opened up my converted project and I got errors telling me that it
>>>>> couldn't find certain spectra. However, analysis fired up and I
>>>>> didn't have any problems. I then saved the project in 2.0 and
>>>>> tried
>>>>> to reopen. Then I got a pop-p window saying "edit project data
>>>>> paths". The missing spectra are highlighted in orange. I then
>>>>> click
>>>>> on the red x at the bottom of the pop-up window and then the error
>>>>> pops up. I cant attach the tarball (16 MB). Its a big project
>>>>> that
>>>>> contains all of my collected NMR data. Anyway to send it via FTP/
>>>>> SFTP
>>>>> to you?
>>>>>
>>>>> J
>>>>>
>>>>>
>>>>> On Nov 5, 2008, at 10:34 AM, Wayne Boucher wrote:
>>>>>
>>>>>> Hmmm, that error message doesn't make sense to me now. The "if
>>>>>> level"
>>>>>> should explictly stop empty strings getting to the float().
>>>>>> Can you
>>>>>> send
>>>>>> me your project directory (not the spectra), and I'll look at
>>>>>> that.
>>>>>>
>>>>>> Thanks, Wayne
>>>>>>
>>>>>> On Wed, 5 Nov 2008, Johnny Croy wrote:
>>>>>>
>>>>>>> Wayne,
>>>>>>>
>>>>>>> Still getting the same error. Here is the traceback after I
>>>>>>> have
>>>>>>> upgraded.
>>>>>>>
>>>>>>>>>> Warning: spectrum (T1_b_0, nmrPipe): data file None not
>>>>>>>>>> accessible
>>>>>>> ValueError: empty string for float()
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/memops/editor/
>>>>>>> OpenProjectPopup.py", line 204, in apply
>>>>>>> self.callback(self.project)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> AnalysisPopup.py", line 997, in initProject
>>>>>>> Analysis.initProject(self, project)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> Analysis.py", line 264, in initProject
>>>>>>> self.initSpectra()
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> Analysis.py", line 900, in initSpectra
>>>>>>> self.initPeakList(peakList, initialising=True)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> Analysis.py", line 1679, in initPeakList
>>>>>>> view = WindowBasic.getSpectrumWindowView(window, spectrum)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> core/
>>>>>>> WindowBasic.py", line 384, in getSpectrumWindowView
>>>>>>> analysisSpectrum = Util.getAnalysisSpectrum(spectrum)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> core/
>>>>>>> Util.py", line 161, in getAnalysisSpectrum
>>>>>>> setupAnalysisSpectrum(analysisSpectrum)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> core/
>>>>>>> Util.py", line 174, in setupAnalysisSpectrum
>>>>>>> levels = getSpectrumContourLevels(spectrum)
>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>> core/
>>>>>>> Util.py", line 739, in getSpectrumContourLevels
>>>>>>> levels = [float(level) for level in
>>>>>>> levels.split(spectrum_contour_separator) if level]
>>>>>>> logout
>>>>>>>
>>>>>>> On Nov 5, 2008, at 1:59 AM, Wayne Boucher wrote:
>>>>>>>
>>>>>>>> Right, hopefully that is fixed now.
>>>>>>>>
>>>>>>>> This error was finally picked up because of fixing that problem
>>>>>>>> for
>>>>>>>> Vicky
>>>>>>>> yesterday. There might be other similar problems now
>>>>>>>> cropping up.
>>>>>>>> Also,
>>>>>>>> I forgot to metion that I have now set it up so that old
>>>>>>>> appData
>>>>>>>> that is
>>>>>>>> v1 specific and not needed in v2 should now be deleted if it is
>>>>>>>> accessed
>>>>>>>> (but that might not happen if you've already saved a project in
>>>>>>>> v2).
>>>>>>>> This might also start to pick up some new bugs.
>>>>>>>>
>>>>>>>> Wayne
>>>>>>>>
>>>>>>>> On Tue, 4 Nov 2008, Johnny Croy wrote:
>>>>>>>>
>>>>>>>>> Hello all.
>>>>>>>>>
>>>>>>>>> Just saved my project in Analysis 2.0.5. I had some spectra
>>>>>>>>> that
>>>>>>>>> couldn't be found (this wasn't a problem in 1.0) and now
>>>>>>>>> when I
>>>>>>>>> try
>>>>>>>>> and open my project I get the following error:
>>>>>>>>>
>>>>>>>>> Project invalid, please quit, fix and re-start: ValueError:
>>>>>>>>> empty
>>>>>>>>> string for float()
>>>>>>>>>
>>>>>>>>> Here is the traceback
>>>>>>>>>
>>>>>>>>>>>> Warning: spectrum (T1_b_0, nmrPipe): data file None not
>>>>>>>>>>>> accessible
>>>>>>>>> ValueError: empty string for float()
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/memops/editor/
>>>>>>>>> OpenProjectPopup.py", line 204, in apply
>>>>>>>>> self.callback(self.project)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> AnalysisPopup.py", line 997, in initProject
>>>>>>>>> Analysis.initProject(self, project)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> Analysis.py", line 264, in initProject
>>>>>>>>> self.initSpectra()
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> Analysis.py", line 900, in initSpectra
>>>>>>>>> self.initPeakList(peakList, initialising=True)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> Analysis.py", line 1679, in initPeakList
>>>>>>>>> view = WindowBasic.getSpectrumWindowView(window, spectrum)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> core/
>>>>>>>>> WindowBasic.py", line 384, in getSpectrumWindowView
>>>>>>>>> analysisSpectrum = Util.getAnalysisSpectrum(spectrum)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> core/
>>>>>>>>> Util.py", line 161, in getAnalysisSpectrum
>>>>>>>>> setupAnalysisSpectrum(analysisSpectrum)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> core/
>>>>>>>>> Util.py", line 174, in setupAnalysisSpectrum
>>>>>>>>> levels = getSpectrumContourLevels(spectrum)
>>>>>>>>> File "/Applications/ccpnmr/ccpnmr2.0/python/ccpnmr/analysis/
>>>>>>>>> core/
>>>>>>>>> Util.py", line 739, in getSpectrumContourLevels
>>>>>>>>> levels = [float(level) for level in
>>>>>>>>> levels.split(spectrum_contour_separator)]
>>>>>>>>>
>>>>>>>>> Any ideas on how to fix this.
>>>>>>>>>
>>>>>>>>> Johnny
>>>>>>>>> ------------------------------------------------------------
>>>>>>>>> Johnny Eugene Croy, Ph.D.
>>>>>>>>> Research Associate
>>>>>>>>> Wuttke Lab
>>>>>>>>>
>>>>>>>>> University of Colorado, Boulder
>>>>>>>>> Department of Chemistry and Biochemistry
>>>>>>>>> UCB 215
>>>>>>>>> Boulder, CO 80309-0215
>>>>>>>>>
>>>>>>>>> Lab: (303) 492-2369
>>>>>>>>> Mobile: (303) 304-6069
>>>>>>>>> ------------------------------------------------------------
>>>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------
>>>>>>> Johnny Eugene Croy, Ph.D.
>>>>>>> Research Associate
>>>>>>> Wuttke Lab
>>>>>>>
>>>>>>> University of Colorado, Boulder
>>>>>>> Department of Chemistry and Biochemistry
>>>>>>> UCB 215
>>>>>>> Boulder, CO 80309-0215
>>>>>>>
>>>>>>> Lab: (303) 492-2369
>>>>>>> Mobile: (303) 304-6069
>>>>>>> ------------------------------------------------------------
>>>>>>>
>>>>>
>>>>> ------------------------------------------------------------
>>>>> Johnny Eugene Croy, Ph.D.
>>>>> Research Associate
>>>>> Wuttke Lab
>>>>>
>>>>> University of Colorado, Boulder
>>>>> Department of Chemistry and Biochemistry
>>>>> UCB 215
>>>>> Boulder, CO 80309-0215
>>>>>
>>>>> Lab: (303) 492-2369
>>>>> Mobile: (303) 304-6069
>>>>> ------------------------------------------------------------
>>>>>
>>>
>>> ------------------------------------------------------------
>>> Johnny Eugene Croy, Ph.D.
>>> Research Associate
>>> Wuttke Lab
>>>
>>> University of Colorado, Boulder
>>> Department of Chemistry and Biochemistry
>>> UCB 215
>>> Boulder, CO 80309-0215
>>>
>>> Lab: (303) 492-2369
>>> Mobile: (303) 304-6069
>>> ------------------------------------------------------------
>>>
>
> Daniel O'Donovan
> [log in to unmask]
>
>
>
------------------------------------------------------------
Johnny Eugene Croy, Ph.D.
Research Associate
Wuttke Lab
University of Colorado, Boulder
Department of Chemistry and Biochemistry
UCB 215
Boulder, CO 80309-0215
Lab: (303) 492-2369
Mobile: (303) 304-6069
------------------------------------------------------------
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