Hi,
I am new in FSL. I want to regsiter a T1 sample image to MNI152 template in
two steps. First, the whole brain registration, and second the subcortical
registration to the result of the first step. I did the first step, but, I have
some problems in doing the second step. Overally, I have the following
questions:
1. Is FSL uses the talairaich standard for image views or another standard?
2. Which command in FSL is used for applying a mask?
2. For the second step of registration registration, I should first apply the
mask to the template, then to the source image and finally, I should register
these two masked images? Am I right or I can specify the mask region in the
registration process itself?
Thanks in advance,
Siamak
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