Please upload the files in a single compressed tarfile to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
And then email me the upload ID.
Cheers.
On 23 Oct 2008, at 17:51, Nick Wymbs wrote:
> We're running the 64 bit version and we do get the problem on at
> least 3 different machines. How do I go about uploading? I thought
> there was a link somewhere on the fsl page but I can't seem to find
> it...
>
> Thanks
> Nick
>
>
> On Thu, Oct 23, 2008 at 2:46 AM, Steve Smith <[log in to unmask]>
> wrote:
> HI - it's possibly a corrupted install of FSL4.1, or possibly bad
> RAM on your machine. Do you have more than one machine of this kind
> that you can test on? Are you definitely running a 64-bit version of
> FSL4.1? If none of this resolves the problem, feel free to upload
> the full (incomplete) FEAT output directory for us to have a look at.
>
> Cheers.
>
>
>
>
> On 22 Oct 2008, at 21:56, Nick Wymbs wrote:
>
>
> The problem is a bit different than I first described. After more
> testing, the crash happens both with the GUI and script, and is
> specific to our Linux machines with CenOS 5 running version 4.1.
> Further, I only experience the error with large functional datasets.
> It works fine either with datasets ranging from 345 - 4140
> timepoints, but not 6210. We're inputting this huge dataset to look
> at across session effects. So this sounds like a memory error,
> except the machines have 32GB of RAM and quad core processors.
> Further, this is specific to Linux and 4.1, as the design runs
> without errors on OSX and ran perfectly under Linux when using FSL
> 4.0. Thoughts?
>
> Cheers
> Nick
>
>
> On Wed, Oct 22, 2008 at 1:17 AM, Steve Smith <[log in to unmask]>
> wrote:
> Hi - it may be an illegal .fsf file for 4.1 - if you load it into
> the GUI, open the model part of the GUI, close that and resave the
> design.fsf, hopefully it will be fixed.
> Cheers.
>
>
>
> On 22 Oct 2008, at 05:10, Nick Wymbs wrote:
>
> Hi -
>
> I receive the following error, listed below, when I try to run feat
> from the command line using the .fsf file. This problem has arisen
> after updating to 4.1. If I copy the fslmaths command directly to my
> shell it runs without a problem. Any leads would be greatly
> appreciated!
>
>
> Thanks
> Nick
>
>
> /usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask
> prefiltered_func_data_thresh
> syntax error in expression "( /usr/local/fsl/bin/fslstats
> prefiltered_func_data_mcf -k m...": unexpected operator /
>
> while executing
> "expr ( $median_intensity - $int2 ) * 0.75 "
> (procedure "feat5:proc_prestats" line 389)
> invoked from within
> "feat5:proc_prestats $session "
> ("-prestats" arm line 2)
>
> invoked from within
> "switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr argindex 1
> set session [ lindex $argv $argindex ]
> }
>
> -D {
> incr argindex 1
> set..."
>
> ("for" body line 2)
> invoked from within
> "for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
> switch -- [ lindex $argv $argindex ] {
>
> -I {
> incr argindex 1
>
> set ses..."
> (file "/usr/local/fsl/bin/feat" line 137)
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
---------------------------------------------------------------------------
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