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Subject:

Re: How to mask 2-level results for specific brain regions

From:

Benjamin Wagner <[log in to unmask]>

Reply-To:

Benjamin Wagner <[log in to unmask]>

Date:

Tue, 7 Oct 2008 09:59:55 -0400

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (92 lines)

Hello Jin,

This is most like a case of mixed case, not a Windows issue.  For the
Pickatlas toolbox to show up in the SPM toolbox dropdown, its directory
name must be in the same case as the command that calls it.  So, if you
have your directory named WFU_Pickatlas or anything with Uppercase
letters, please rename it to the all lowercase: wfu_pickatlas.  It
should then show up in the toolbox listing.

Ben


-----Original Message-----
From: SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]]
On Behalf Of Jin Bo
Sent: Tuesday, October 07, 2008 9:22 AM
To: [log in to unmask]
Subject: Re: [SPM] How to mask 2-level results for specific brain
regions
Importance: High

Thank you very much. This is exactly what I want. However, after I add
the WFU_PickAtlas under toolbox directory, add the path on top of SPM, I
cannot see it appeared in the toolbox menu. Is there something special
about running this in windows? On the manual, it says that this has not
been tested in windows.

Thank you very much

Jin

Quoting "MCLAREN, Donald" <[log in to unmask]>:

> If you have the WFU_PickAtlas toolbox installed....
>
> Open it from within SPM, from the toolbox menu. Then make your ROI and

> save it. Close the PickAtlas.
>
> Now, when you go through the results menu, there will be an ROI open, 
> click yes.
> Then, if you've saved the file; click saved file (otherwise select the

> other open).
>
> Hopefully, this is what you wanted to do.
>
> On Mon, Oct 6, 2008 at 10:50 AM, Jin <[log in to unmask]> wrote:
>
>> Hi, All,
>>
>> I am trying to mask my 2-level results for one particular brain area,
e.g.
>> BA
>> 9&46. I can get that template image file from WFU_PickAtlas. Where is

>> the place that I can select this region as a mask on top of my group 
>> activation?
>>
>> Thank you very much
>>
>> Jin
>>
>
>
>
> --
> Best Regards, Donald McLaren
> =====================
> D.G. McLaren
> University of Wisconsin - Madison
> Neuroscience Training Program
> Office: (608) 265-9672
> Lab: (608) 256-1901 ext 12914
> Cell: (773) 406 2464
> =====================
> This e-mail contains CONFIDENTIAL INFORMATION which may contain 
> PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED 
> and which is intended only for the use of the individual or entity 
> named above. If the reader of the e-mail is not the intended recipient

> or the employee or agent responsible for delivering it to the intended

> recipient, you are hereby notified that you are in possession of 
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> disclosure, copying or the taking of any action in reliance on the 
> contents of this information is strictly prohibited and may be 
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> immediately notify the sender via telephone at (773)
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>

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